Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   K6969_RS09380 Genome accession   NZ_CP082205
Coordinates   1949255..1949920 (-) Length   221 a.a.
NCBI ID   WP_029173963.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1944255..1954920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS09375 (K6969_09270) hpf 1948635..1949177 (-) 543 WP_014637536.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  K6969_RS09380 (K6969_09275) comFC/cflB 1949255..1949920 (-) 666 WP_029173963.1 ComF family protein Machinery gene
  K6969_RS09385 (K6969_09280) comFA/cflA 1949913..1951205 (-) 1293 WP_171943154.1 DEAD/DEAH box helicase Machinery gene
  K6969_RS09390 (K6969_09285) - 1951262..1951894 (+) 633 WP_029173961.1 YigZ family protein -
  K6969_RS09395 (K6969_09290) cysK 1951983..1952909 (+) 927 WP_029173960.1 cysteine synthase A -
  K6969_RS09400 (K6969_09295) - 1952936..1953307 (-) 372 WP_029173959.1 S1 RNA-binding domain-containing protein -
  K6969_RS09405 (K6969_09300) - 1953309..1954709 (-) 1401 WP_029173958.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25724.53 Da        Isoelectric Point: 8.4541

>NTDB_id=600058 K6969_RS09380 WP_029173963.1 1949255..1949920(-) (comFC/cflB) [Streptococcus suis strain AKJ18]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKTVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=600058 K6969_RS09380 WP_029173963.1 1949255..1949920(-) (comFC/cflB) [Streptococcus suis strain AKJ18]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGTATATGTGAAGAATGTTTTTCAACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAAACAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAGTTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484