Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   K6969_RS03005 Genome accession   NZ_CP082205
Coordinates   592416..593060 (-) Length   214 a.a.
NCBI ID   WP_029173432.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 593803..594300 592416..593060 flank 743


Gene organization within MGE regions


Location: 592416..594300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS03005 (K6969_02945) cclA/cilC 592416..593060 (-) 645 WP_029173432.1 prepilin peptidase Machinery gene
  K6969_RS03010 (K6969_02950) - 593190..593744 (+) 555 WP_029173433.1 tRNA (mnm(5)s(2)U34)-methyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24283.33 Da        Isoelectric Point: 8.4694

>NTDB_id=600039 K6969_RS03005 WP_029173432.1 592416..593060(-) (cclA/cilC) [Streptococcus suis strain AKJ18]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRLLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLIFTFIALVLSQLNWLFCGFLVLAYLTEKWQLNIGSGDFL
YLASLSLLFGFTEILWIIQLSSIIGLAIFFIFKPKSLPYVPFLFLASLVINITL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=600039 K6969_RS03005 WP_029173432.1 592416..593060(-) (cclA/cilC) [Streptococcus suis strain AKJ18]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACTGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTTTGGCTCATTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTGGTCCTAGCCTATCTGACTGAAAAATGGCAACTCAATATCGGTTCTGGTGACTTTCTC
TATCTGGCAAGTCTGTCTCTTTTGTTTGGCTTTACAGAAATTCTCTGGATTATTCAGCTTAGTTCCATCATTGGACTGGC
AATCTTTTTTATCTTTAAACCAAAATCCCTCCCTTATGTTCCTTTTCTATTTTTAGCCAGTCTAGTCATCAATATCACTC
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.289

98.598

0.486
  cclA/cilC Streptococcus mitis NCTC 12261

47.393

98.598

0.467
  cclA/cilC Streptococcus pneumoniae Rx1

48.78

95.794

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.78

95.794

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.78

95.794

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

47.805

95.794

0.458