Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   K6974_RS09810 Genome accession   NZ_CP082204
Coordinates   1961462..1962106 (+) Length   214 a.a.
NCBI ID   WP_222337157.1    Uniprot ID   A0A9X4RRL8
Organism   Streptococcus suis strain FJSM5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1956462..1967106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS09785 (K6974_09680) - 1957123..1958460 (-) 1338 WP_222337161.1 hemolysin family protein -
  K6974_RS09790 (K6974_09685) - 1958593..1959372 (+) 780 WP_222337160.1 ABC transporter ATP-binding protein -
  K6974_RS09795 (K6974_09690) - 1959388..1959942 (-) 555 WP_222337159.1 class I SAM-dependent methyltransferase -
  K6974_RS09800 (K6974_09695) - 1959952..1960470 (-) 519 WP_222337158.1 TetR/AcrR family transcriptional regulator -
  K6974_RS09805 (K6974_09700) - 1960592..1961410 (+) 819 WP_024375858.1 cation diffusion facilitator family transporter -
  K6974_RS09810 (K6974_09705) cclA/cilC 1961462..1962106 (+) 645 WP_222337157.1 A24 family peptidase Machinery gene
  K6974_RS09815 (K6974_09710) - 1962214..1963674 (+) 1461 WP_222337156.1 nicotinate phosphoribosyltransferase -
  K6974_RS09820 (K6974_09715) nadE 1963687..1964511 (+) 825 WP_222337155.1 ammonia-dependent NAD(+) synthetase -
  K6974_RS09825 (K6974_09720) trpB 1964763..1965938 (-) 1176 WP_222337154.1 tryptophan synthase subunit beta -
  K6974_RS09830 (K6974_09725) - 1966469..1966990 (-) 522 WP_222337153.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24317.35 Da        Isoelectric Point: 8.4694

>NTDB_id=600003 K6974_RS09810 WP_222337157.1 1961462..1962106(+) (cclA/cilC) [Streptococcus suis strain FJSM5]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRLLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLSLLFGFTEILWIIQLSSIFGLAIFFIFKPKSLPYVPFLFLASLVINITL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=600003 K6974_RS09810 WP_222337157.1 1961462..1962106(+) (cclA/cilC) [Streptococcus suis strain FJSM5]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACTGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTCTGTCTCTTTTGTTTGGCTTTACAGAAATTCTTTGGATTATTCAGCTTAGTTCCATCTTTGGACTGGC
AATCTTTTTTATCTTTAAACCAAAATCCCTTCCTTATGTGCCTTTTCTATTTTTAGCCAGTCTAGTCATCAATATCACTC
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.763

98.598

0.491
  cclA/cilC Streptococcus pneumoniae Rx1

49.268

95.794

0.472
  cclA/cilC Streptococcus pneumoniae D39

49.268

95.794

0.472
  cclA/cilC Streptococcus pneumoniae R6

49.268

95.794

0.472
  cclA/cilC Streptococcus mitis NCTC 12261

47.393

98.598

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

48.293

95.794

0.463