Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   NAT22_RS28905 Genome accession   NZ_CP098485
Coordinates   6293413..6294192 (-) Length   259 a.a.
NCBI ID   WP_201823838.1    Uniprot ID   A0ABS1P9E8
Organism   Streptomyces sp. Caat 7-52     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6288413..6299192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAT22_RS28895 - 6290036..6290806 (+) 771 WP_251095224.1 GNAT family N-acetyltransferase -
  NAT22_RS28900 - 6291294..6293270 (+) 1977 WP_251095225.1 ATP-dependent DNA helicase -
  NAT22_RS28905 dinR/lexA 6293413..6294192 (-) 780 WP_201823838.1 transcriptional repressor LexA Regulator
  NAT22_RS28910 nrdR 6294756..6295307 (+) 552 WP_201823836.1 transcriptional regulator NrdR -
  NAT22_RS28915 - 6295473..6298367 (+) 2895 WP_251095226.1 vitamin B12-dependent ribonucleotide reductase -
  NAT22_RS28920 - 6298461..6298997 (-) 537 WP_285440359.1 TerD family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28037.76 Da        Isoelectric Point: 7.0666

>NTDB_id=599992 NAT22_RS28905 WP_201823838.1 6293413..6294192(-) (dinR/lexA) [Streptomyces sp. Caat 7-52]
MTTTADSATITAQDRSQGRVEPVHAMNEATNTEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAVTVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=599992 NAT22_RS28905 WP_201823838.1 6293413..6294192(-) (dinR/lexA) [Streptomyces sp. Caat 7-52]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGAGTCGAGCCGGTACACGCGATGAA
CGAAGCCACGAACACCGAGGGGCACAAGCGCTCCCTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCCGGACTCA
CCGACCGGCAACGTCGGGTGATCGAGGTCATCAGGGACTCCGTACAGCGGCGCGGTTACCCGCCGTCGATGCGGGAGATC
GGGCAGGCCGTCGGCCTCTCCAGCACGTCGTCCGTCGCCCACCAGCTGATGGCGCTGGAGCGCAAGGGCTTCCTGCGCCG
GGACCCCCACCGCCCGCGCGCGTACGAGGTGCGCGGATCGGACCAGGCCGTCACCGTGCAGCCCACGGACACCGCCGGCA
AGCCTGCCGCGTCGTACGTCCCGCTCGTCGGCCGTATCGCCGCCGGTGGCCCGATCCTCGCGGAGGAGTCGGTCGAGGAT
GTCTTTCCTCTCCCCCGCCAGCTCGTCGGTGACGGCGAACTGTTCGTCCTGAAGGTCGTCGGCGATTCCATGATCGAGGC
CGCGATCTGTGACGGCGACTGGGTCACCGTGCGCCGGCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCCATGCTCG
ACGGCGAAGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTTCTCCCCCACAACGCGGCCTACGAGCCC
ATCCCCGGCGACGACGCGACCATCCTGGGCAAGGTCGTCGCTGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.467

0.378