Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   K6974_RS04090 Genome accession   NZ_CP082204
Coordinates   783027..785264 (+) Length   745 a.a.
NCBI ID   WP_222336859.1    Uniprot ID   A0A9X4RUC0
Organism   Streptococcus suis strain FJSM5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 778027..790264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS04070 (K6974_04040) - 778723..779508 (-) 786 WP_222336863.1 ABC transporter ATP-binding protein -
  K6974_RS04075 (K6974_04045) - 779974..781419 (-) 1446 WP_222336862.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  K6974_RS04080 (K6974_04050) - 781566..782312 (+) 747 WP_222336861.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  K6974_RS04085 (K6974_04055) - 782381..783043 (+) 663 WP_222336860.1 helix-hairpin-helix domain-containing protein -
  K6974_RS04090 (K6974_04060) comEC/celB 783027..785264 (+) 2238 WP_222336859.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83951.70 Da        Isoelectric Point: 7.2319

>NTDB_id=599986 K6974_RS04090 WP_222336859.1 783027..785264(+) (comEC/celB) [Streptococcus suis strain FJSM5]
MSRSIKLPCQPIHLALLAVAVYFAVHSFSLLTIGLLSLVLTVFGVRQGKTVFLKTLPLLALCGLFFGYQKVQWERADQSA
PEQVTTVQVISDTIEVNGDSLSFRGRADGQTYQVFYKLASQEEQTYFQQLTDLVQLEVEAEVSLPTGQRNFKGFDYQAYL
KTQGIYRMVTITAIKKISPVQSWNVFDWLSSWRRSALVSIKTHFPAPMSHYMTGLLFGDLDSDFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWMLLRLGLTKERVDKLQIPFSFVYAGLTGFSVSVVRSLVQKILGNLGLRKLDNFAVTVFVCLLIL
PRFLLTAGGILTFTYAFLLTVFDFEDVGQVKKAAVESLSISLGILPILMTYFYAFQPLSILLTFVFSFVFDVLLLPGLSV
IFLLSPLVKMIWVNGFFVFMEKIIVWVADLGFRPWILGKPSGVILVLLLVSLFLLYDFHRKKNWLLGLNLVLALLFFITK
HPLENEVTVVDIGQGDSIFLRDMRGRTVLIDVGGRVDFAAKEAWQERSSQANAERTLIPYLHSRGVDRIDSLVLTHTDAD
HVGDVLEVAKQVQIGRIVVSSGSLTVPDFVATLKEINVPVHVVEVGDRLPIFDSYLEVLYPDRAGDGGNNDSIVLYGRLL
KTNFLFTGDLEQGELDLLKTYPNLPVDVLKAGHHGSKGSSYPEFLDHIGAKIALVSAGESNRYKHPHQETLERFDSRNIQ
VYRTDQQGAIRFRGWKEWRIETVRE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=599986 K6974_RS04090 WP_222336859.1 783027..785264(+) (comEC/celB) [Streptococcus suis strain FJSM5]
ATGTCACGGTCGATTAAGCTCCCCTGCCAGCCCATCCACTTGGCTCTTTTGGCAGTTGCGGTCTACTTTGCAGTCCACTC
TTTTTCCCTGTTGACAATAGGCCTACTCAGTTTGGTGTTAACTGTCTTTGGTGTTCGGCAAGGTAAGACAGTTTTCCTCA
AAACGCTGCCGCTTCTAGCCCTATGTGGCTTGTTTTTCGGCTACCAAAAGGTCCAATGGGAGCGGGCAGACCAGTCAGCC
CCAGAGCAAGTCACCACTGTGCAGGTCATTTCAGATACCATTGAAGTCAACGGGGACAGCCTGTCCTTTCGCGGTCGGGC
TGACGGACAAACCTATCAGGTGTTTTACAAATTAGCCAGTCAGGAGGAGCAGACTTATTTTCAACAACTAACAGATCTGG
TCCAGTTGGAAGTGGAAGCAGAGGTCAGCCTGCCAACTGGTCAGCGGAATTTCAAGGGTTTTGACTATCAGGCCTATCTG
AAAACACAGGGGATTTATCGGATGGTCACGATTACGGCGATAAAAAAGATTTCCCCAGTCCAGTCTTGGAATGTCTTTGA
CTGGCTGTCAAGCTGGCGGAGAAGTGCGCTTGTTTCTATCAAAACTCATTTTCCAGCTCCCATGAGTCACTACATGACAG
GGCTCTTGTTTGGGGACTTGGACAGTGATTTCGACCAGATGAGCGATCTTTATTCTAGTCTAGGAATCATTCATCTCTTT
GCCCTGTCTGGCATGCAGGTTGGATTTTTCATCGACAAGTTTCGCTGGATGTTACTGCGTTTGGGCTTGACCAAGGAAAG
GGTGGATAAGTTACAAATTCCCTTTTCCTTTGTCTATGCGGGCTTGACAGGCTTTTCGGTGTCAGTGGTGCGGTCTTTGG
TTCAAAAAATTCTGGGTAATCTGGGCTTGCGGAAGTTGGATAACTTTGCGGTGACAGTTTTTGTCTGTCTGCTGATTCTG
CCCCGATTTTTACTGACAGCAGGAGGTATATTGACCTTTACCTATGCTTTCTTGCTGACGGTTTTTGATTTTGAGGATGT
TGGGCAGGTCAAAAAGGCTGCGGTGGAGAGCCTCAGTATTTCACTTGGAATTTTGCCGATTCTCATGACCTATTTCTATG
CCTTCCAGCCCTTGTCTATTCTCTTGACTTTTGTCTTTTCCTTTGTCTTTGATGTCCTGCTTTTGCCAGGTTTGTCGGTC
ATTTTTCTCCTGTCGCCCTTGGTCAAGATGATCTGGGTCAACGGATTTTTTGTCTTTATGGAAAAAATCATTGTCTGGGT
GGCTGATTTGGGTTTTCGGCCTTGGATATTGGGCAAGCCGTCTGGGGTAATTCTTGTTCTTTTGCTGGTCAGCCTCTTCT
TGCTCTACGATTTCCACAGGAAGAAAAACTGGCTCCTAGGACTGAACCTGGTCCTTGCTCTGCTATTTTTCATCACCAAA
CACCCGCTGGAAAACGAGGTGACGGTGGTGGATATCGGGCAGGGGGACAGCATCTTTTTGCGGGATATGCGGGGGCGGAC
GGTTCTGATTGATGTGGGTGGTCGGGTCGATTTTGCGGCCAAGGAAGCCTGGCAGGAGCGGTCTTCGCAGGCAAATGCAG
AGCGGACTTTGATTCCCTATCTGCATAGTCGGGGCGTGGACAGGATTGATAGTTTGGTCCTGACCCACACCGACGCAGAC
CATGTGGGCGATGTGCTGGAAGTGGCTAAGCAAGTACAAATTGGTCGGATTGTCGTGTCGTCGGGAAGTCTGACGGTGCC
TGACTTTGTAGCAACCTTGAAAGAAATCAATGTCCCTGTTCATGTGGTGGAGGTGGGCGACCGATTGCCGATTTTTGACT
CCTATCTGGAAGTTCTCTATCCAGACAGGGCAGGCGACGGTGGGAATAATGATTCCATCGTTCTTTATGGCCGCTTGCTG
AAAACTAATTTTCTTTTTACTGGGGACTTGGAGCAGGGGGAGTTGGACTTGCTTAAAACCTATCCCAACCTGCCTGTCGA
TGTCCTCAAGGCTGGGCACCATGGCTCAAAAGGTTCTTCCTATCCTGAATTTCTAGACCATATCGGAGCCAAGATTGCTC
TGGTATCAGCAGGAGAAAGTAATCGCTACAAACATCCACACCAAGAAACTTTGGAACGATTTGATAGTCGCAATATCCAA
GTCTATCGCACAGACCAGCAAGGTGCCATCCGCTTCCGAGGCTGGAAGGAGTGGAGGATTGAGACGGTGAGGGAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(215-460)

Domain of unknown function (DUF4131) (DUF4131)

(29-175)

Metallo-beta-lactamase superfamily (Lactamase_B)

(493-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

55

99.329

0.546
  comEC/celB Streptococcus mitis NCTC 12261

54.014

98.658

0.533
  comEC/celB Streptococcus pneumoniae TIGR4

53.125

98.792

0.525
  comEC/celB Streptococcus pneumoniae Rx1

52.989

98.792

0.523
  comEC/celB Streptococcus pneumoniae D39

52.989

98.792

0.523
  comEC/celB Streptococcus pneumoniae R6

52.989

98.792

0.523
  comEC Lactococcus lactis subsp. cremoris KW2

48.933

100

0.493