Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   K6972_RS07985 Genome accession   NZ_CP082203
Coordinates   1628094..1628738 (+) Length   214 a.a.
NCBI ID   WP_222812468.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623094..1633738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS07960 (K6972_07960) - 1623753..1625090 (-) 1338 WP_002942867.1 hemolysin family protein -
  K6972_RS07965 (K6972_07965) - 1625223..1626002 (+) 780 WP_024388290.1 ABC transporter ATP-binding protein -
  K6972_RS07970 (K6972_07970) - 1626018..1626572 (-) 555 WP_222812465.1 class I SAM-dependent methyltransferase -
  K6972_RS07975 (K6972_07975) - 1626582..1627100 (-) 519 WP_222812466.1 TetR/AcrR family transcriptional regulator -
  K6972_RS07980 (K6972_07980) - 1627222..1628040 (+) 819 WP_222812467.1 cation diffusion facilitator family transporter -
  K6972_RS07985 (K6972_07985) cclA/cilC 1628094..1628738 (+) 645 WP_222812468.1 A24 family peptidase Machinery gene
  K6972_RS07990 (K6972_07990) - 1628846..1630306 (+) 1461 WP_024406672.1 nicotinate phosphoribosyltransferase -
  K6972_RS07995 (K6972_07995) nadE 1630319..1631143 (+) 825 WP_222812469.1 ammonia-dependent NAD(+) synthetase -
  K6972_RS08000 (K6972_08000) trpB 1631184..1632359 (-) 1176 WP_114866737.1 tryptophan synthase subunit beta -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24145.15 Da        Isoelectric Point: 8.2861

>NTDB_id=599945 K6972_RS07985 WP_222812468.1 1628094..1628738(+) (cclA/cilC) [Streptococcus suis strain NJ3]
MKTIILFFLGASIGSFLGLVIDRFPEQSIISPSSHCNACKRQLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEVLAG
LVVLLCHFQVLNLTETILSLAGLVLTIYDIKHQEYPFAVWLVFTFTALILSQLNWLFCGFLLLAYLTEKWQVNIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=599945 K6972_RS07985 WP_222812468.1 1628094..1628738(+) (cclA/cilC) [Streptococcus suis strain NJ3]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCTCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACAGCTCAAGGCCTGGGACCTAATACCCATCCTATCCC
AGCTTTCAACAAAATCCAAATGCCGTTACTGCAAGGCCAAGATCCCTTATTGGTATCTGGGACTAGAAGTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCAGCTTAGCAGGGCTAGTTTTGACCAT
TTATGACATCAAGCATCAGGAATATCCTTTTGCTGTCTGGCTCGTTTTTACTTTTACAGCTCTGATACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTAACTGAAAAATGGCAAGTCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAAATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

48.585

99.065

0.481
  cclA/cilC Streptococcus pneumoniae Rx1

47.17

99.065

0.467
  cclA/cilC Streptococcus pneumoniae D39

47.17

99.065

0.467
  cclA/cilC Streptococcus pneumoniae R6

47.17

99.065

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

46.698

99.065

0.463
  cclA/cilC Streptococcus mitis NCTC 12261

44.811

99.065

0.444