Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   K6976_RS02370 Genome accession   NZ_CP082202
Coordinates   474282..474947 (+) Length   221 a.a.
NCBI ID   WP_222759853.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469282..479947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS02345 (K6976_02345) - 469493..470893 (+) 1401 WP_044692311.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  K6976_RS02350 (K6976_02350) - 470895..471266 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  K6976_RS02355 (K6976_02355) cysK 471292..472218 (-) 927 WP_002937015.1 cysteine synthase A -
  K6976_RS02360 (K6976_02360) - 472308..472940 (-) 633 WP_015646510.1 YigZ family protein -
  K6976_RS02365 (K6976_02365) comFA/cflA 472997..474289 (+) 1293 WP_222759851.1 DEAD/DEAH box helicase Machinery gene
  K6976_RS02370 (K6976_02370) comFC/cflB 474282..474947 (+) 666 WP_222759853.1 ComF family protein Machinery gene
  K6976_RS02375 (K6976_02375) hpf 475024..475566 (+) 543 WP_014637536.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25711.58 Da        Isoelectric Point: 8.6258

>NTDB_id=599873 K6976_RS02370 WP_222759853.1 474282..474947(+) (comFC/cflB) [Streptococcus suis strain SS389]
MSNCLLCGQAMKNKIRFSDLILFSKEKSGTCEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALRQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDGKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=599873 K6976_RS02370 WP_222759853.1 474282..474947(+) (comFC/cflB) [Streptococcus suis strain SS389]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAATAAGATTTTCAGATCTCATCTTATTTAGTAAAGAAAA
ATCGGGTACTTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAACATTTTTGCTAAAAAGCTTAG
AATAGCGTTACGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGGTTTA
ATCAAGTAGAAGGACTTTTGGATGCTACAAATATTCCTTATCAATCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCG
TCTAAAAATCGAGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGGAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATCGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae TIGR4

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae Rx1

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae D39

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae R6

50

98.643

0.493
  comFC/cflB Streptococcus mitis NCTC 12261

50

98.643

0.493