Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABWED_RS14360 Genome accession   NZ_CP082143
Coordinates   2968147..2968734 (-) Length   195 a.a.
NCBI ID   WP_004647277.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED23-35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2963147..2973734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWED_RS14335 (ABWED_2969) - 2963907..2964134 (+) 228 WP_004647282.1 hypothetical protein -
  ABWED_RS14345 (ABWED_2971) - 2964491..2965339 (-) 849 WP_004647281.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  ABWED_RS14350 (ABWED_2972) - 2965343..2966650 (-) 1308 WP_004647280.1 FAD-dependent oxidoreductase -
  ABWED_RS14355 (ABWED_2973) ahpC 2967272..2967835 (-) 564 WP_004647278.1 alkyl hydroperoxide reductase subunit C -
  ABWED_RS14360 (ABWED_2974) ssb 2968147..2968734 (-) 588 WP_004647277.1 single-stranded DNA-binding protein Machinery gene
  ABWED_RS14365 (ABWED_2975) - 2968786..2970150 (-) 1365 WP_016807025.1 MFS transporter -
  ABWED_RS14370 (ABWED_2976) - 2970304..2971392 (-) 1089 WP_004647275.1 DUF475 domain-containing protein -
  ABWED_RS14375 (ABWED_2978) tenA 2971615..2972286 (+) 672 WP_004281386.1 thiaminase II -
  ABWED_RS14380 (ABWED_2979) - 2972510..2972878 (+) 369 WP_004281385.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21387.12 Da        Isoelectric Point: 6.4820

>NTDB_id=599501 ABWED_RS14360 WP_004647277.1 2968147..2968734(-) (ssb) [Acinetobacter lwoffii strain ED23-35]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYGNNPQSGYGSAPQQGGFNNN
QGGGYGNNNPSGFAPKSAPAPTAAPAVDLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=599501 ABWED_RS14360 WP_004647277.1 2968147..2968734(-) (ssb) [Acinetobacter lwoffii strain ED23-35]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTTTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCGCAGCAATATCTTCGTAAAGGCTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAACGCTATACGACGGAAATTCGTGGTGAGCAAATGCAGAT
GCTAGACTCTAGCCGTCCTCAAAATGATCAGGGCGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAGGGCGGTTATGGTAATAACCCGCAATCGGGTTATGGTTCAGCACCACAGCAAGGCGGTTTTAACAACAAC
CAGGGCGGCGGTTATGGCAATAATAACCCGAGTGGTTTTGCGCCGAAATCTGCACCTGCTCCAACAGCAGCGCCTGCAGT
AGATCTAGATGATGACTTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.759

100

0.528
  ssb Vibrio cholerae strain A1552

41.206

100

0.421
  ssb Neisseria meningitidis MC58

37.5

98.462

0.369
  ssb Neisseria gonorrhoeae MS11

37.5

98.462

0.369