Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ABWED_RS01020 Genome accession   NZ_CP082143
Coordinates   233538..234677 (-) Length   379 a.a.
NCBI ID   WP_004644873.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED23-35     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 228538..239677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWED_RS00995 (ABWED_0205) - 228791..229783 (-) 993 WP_005264663.1 pirin family protein -
  ABWED_RS01000 (ABWED_0206) - 229925..230524 (-) 600 WP_004644869.1 hypothetical protein -
  ABWED_RS01005 (ABWED_0207) - 230849..231394 (-) 546 WP_004281007.1 glutathione peroxidase -
  ABWED_RS01010 (ABWED_0208) - 231585..232481 (+) 897 WP_004644871.1 DMT family transporter -
  ABWED_RS01015 (ABWED_0209) - 232927..233496 (-) 570 WP_004644872.1 L-threonylcarbamoyladenylate synthase -
  ABWED_RS01020 (ABWED_0210) dprA 233538..234677 (-) 1140 WP_004644873.1 DNA-processing protein DprA Machinery gene
  ABWED_RS01025 (ABWED_0211) tsaP 234769..235923 (-) 1155 WP_005264667.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABWED_RS01030 (ABWED_0212) def 236044..236574 (+) 531 WP_004644875.1 peptide deformylase -
  ABWED_RS01035 (ABWED_0213) - 236667..237077 (+) 411 WP_222112365.1 DUF2946 family protein -
  ABWED_RS01040 (ABWED_0214) - 237150..239237 (+) 2088 WP_222112364.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42631.35 Da        Isoelectric Point: 6.8410

>NTDB_id=599465 ABWED_RS01020 WP_004644873.1 233538..234677(-) (dprA) [Acinetobacter lwoffii strain ED23-35]
MLNTLSTAQIHAITLWYLLQHSLSSFYKISQHYADLAHAIDGSQTETWRKLGIHKNHIQRLQDFQSSESQLHFQRSLEQI
QLHSDFVLLHTDAEYPQQLSHYAHKPPILFGQGYADQLLQPQIAIVGSRKPSLHGRQVAYDFAFYLSEQGFYINSGLAQG
IDEAAHQAALQHRRTIAVMGTGIEQTYPAAHQTLRQQIIEHGGTVITEFLPFTPPLQQHFPRRNRIVSGLSLGVIVAEAA
LKSGSLLTAQWAAEQGKTTFAIPGHIYSEHHQGCHQLIREGAILIDHPQQVIEELALATQWQALENTTKTKVIEATSQQI
PPHLLSLYNQLDWVGQSLDQLGTQVQQEVSALTSQLMELELLGFCTQQAGLYLRCRILK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=599465 ABWED_RS01020 WP_004644873.1 233538..234677(-) (dprA) [Acinetobacter lwoffii strain ED23-35]
ATGTTGAATACATTGTCGACAGCGCAAATCCATGCCATTACGCTGTGGTATTTACTGCAACACTCCCTCAGCAGCTTTTA
TAAAATCAGTCAGCATTATGCAGACCTCGCCCATGCAATTGATGGTTCTCAAACCGAAACCTGGCGTAAGTTGGGCATTC
ATAAAAACCACATTCAGCGCCTGCAAGATTTCCAGTCAAGTGAGTCGCAGCTCCATTTTCAGCGCAGTCTTGAGCAGATC
CAGTTGCACAGTGACTTTGTGCTTTTACATACAGATGCCGAATATCCACAGCAATTGAGCCATTATGCGCATAAGCCGCC
AATCCTGTTCGGGCAAGGGTATGCAGATCAATTGCTGCAACCGCAAATCGCGATTGTGGGGAGTCGCAAGCCCAGTCTGC
ACGGCCGGCAAGTCGCTTATGACTTTGCTTTTTATTTGAGTGAACAGGGTTTTTATATTAATAGTGGCCTGGCACAAGGG
ATTGATGAAGCCGCACATCAGGCCGCATTACAACATCGGCGAACGATTGCAGTGATGGGCACAGGCATTGAACAGACCTA
CCCTGCTGCCCATCAAACACTACGTCAGCAAATCATCGAACATGGAGGTACGGTCATTACTGAGTTTTTGCCATTTACTC
CCCCCTTACAGCAGCATTTTCCACGGCGTAACCGAATTGTCAGTGGCTTAAGCCTCGGGGTGATTGTGGCAGAAGCCGCC
TTGAAAAGCGGTTCATTGCTGACCGCACAATGGGCAGCGGAACAAGGCAAGACCACATTCGCCATCCCGGGGCATATTTA
CAGTGAACATCACCAGGGCTGTCACCAACTGATTCGTGAAGGTGCGATTCTGATTGACCATCCACAGCAGGTCATCGAAG
AACTGGCGCTGGCCACGCAATGGCAAGCTTTGGAAAACACCACCAAAACGAAAGTTATTGAAGCAACATCACAGCAAATT
CCACCGCATCTGCTCAGTCTGTATAATCAGCTGGACTGGGTGGGACAGAGTTTGGATCAACTGGGAACGCAGGTTCAGCA
AGAGGTATCTGCTTTGACCAGCCAACTCATGGAACTGGAGTTACTCGGTTTTTGTACCCAGCAAGCCGGCCTCTATCTAC
GTTGTCGGATTCTCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

60.904

99.208

0.604

  dprA Acinetobacter baumannii D1279779

60.372

99.208

0.599

  dprA Acinetobacter baylyi ADP1

57.105

100

0.573