Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABWED_RS01025 Genome accession   NZ_CP082143
Coordinates   234769..235923 (-) Length   384 a.a.
NCBI ID   WP_005264667.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED23-35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 229769..240923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWED_RS01000 (ABWED_0206) - 229925..230524 (-) 600 WP_004644869.1 hypothetical protein -
  ABWED_RS01005 (ABWED_0207) - 230849..231394 (-) 546 WP_004281007.1 glutathione peroxidase -
  ABWED_RS01010 (ABWED_0208) - 231585..232481 (+) 897 WP_004644871.1 DMT family transporter -
  ABWED_RS01015 (ABWED_0209) - 232927..233496 (-) 570 WP_004644872.1 L-threonylcarbamoyladenylate synthase -
  ABWED_RS01020 (ABWED_0210) dprA 233538..234677 (-) 1140 WP_004644873.1 DNA-processing protein DprA Machinery gene
  ABWED_RS01025 (ABWED_0211) tsaP 234769..235923 (-) 1155 WP_005264667.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABWED_RS01030 (ABWED_0212) def 236044..236574 (+) 531 WP_004644875.1 peptide deformylase -
  ABWED_RS01035 (ABWED_0213) - 236667..237077 (+) 411 WP_222112365.1 DUF2946 family protein -
  ABWED_RS01040 (ABWED_0214) - 237150..239237 (+) 2088 WP_222112364.1 TonB-dependent copper receptor -
  ABWED_RS01045 (ABWED_0215) - 239477..240505 (-) 1029 WP_168386782.1 transposase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42232.48 Da        Isoelectric Point: 9.0687

>NTDB_id=599466 ABWED_RS01025 WP_005264667.1 234769..235923(-) (tsaP) [Acinetobacter lwoffii strain ED23-35]
MKKVLKGMPFFSALGFKNQMLALAVCVGVSMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLLAPDSVQGTPYILGTADQRVLAGKGQKVYARGHGLVVGQRYAVYREAEPYVFTDANGKKYTSALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSIVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQVMVFKTFDQLSYAYVLESELPIKVGANIQPPLLED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=599466 ABWED_RS01025 WP_005264667.1 234769..235923(-) (tsaP) [Acinetobacter lwoffii strain ED23-35]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTTGCCGTTTGTGT
TGGCGTCAGTATGGGGACCATTCATTCTGCCGAGGCAGCACCTGCACGCAACGTCAATCCACCGGCATTAAAAGCCAATG
CACCGAACGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATCTCGAAACGCTTCCTGAAAAATCCGGTCCGTTGG
CCGGAAATCTGGGCGAGTAATAAGCACGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGTTGATGTGTGATTA
CCAGGGCCGCCCGATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGTATTATCAGCCGCTATCTTGGCAGTACTTCTC
TGCAGCCCCAGATTCGTGTTGAATCTTTAAATAATACGATTCCCGTGATTCCGCTTGAGCACATCAAGCAGTGGCTAGAA
CGCTACACCCTTCTGGCACCTGATTCAGTTCAGGGCACACCCTACATTCTCGGAACTGCAGATCAGCGCGTACTGGCTGG
CAAAGGTCAGAAAGTCTATGCACGTGGTCACGGCTTGGTAGTGGGTCAACGCTATGCGGTGTATCGTGAAGCTGAACCGT
ATGTATTTACGGATGCAAATGGCAAGAAATATACGTCTGCACTCGAGCTGCAACAGGTGGCATCTGGTATTGCGGTACGT
GGCGAAGGTGATGTCACCACACTTGAACTGACAGATAGTTACAATGCAGAAGTACGTCGTGGTGATCGCGTCTTGCCTGA
ATACGATCCAATGTTACCGACCCTGTTCTATCCGACCAATGCAGAAAATATTGCTGCCGGTGGTCAGATTGTGCGTGTAT
TGGGGTCGATTGGTACAGCAGCACGTCATAGTATCGTCACCATTGACCGTGGTACGGCACATGGGGTTCAGACGGGTCAT
GTCTTTAGCGTGAATCAAAAAGGTGAAGTGGTGACTGATCCGAAAACCAAAGAACGGGTGCAATTACCGGGCGAGCGTAT
TGGTCAGGTCATGGTATTTAAAACCTTCGATCAATTGAGCTACGCTTATGTGCTGGAAAGTGAATTACCAATCAAGGTTG
GTGCCAACATTCAGCCGCCACTATTAGAAGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.052

100

0.682