Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6J69_RS03490 Genome accession   NZ_AP018777
Coordinates   705440..705961 (+) Length   173 a.a.
NCBI ID   WP_050846025.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 700440..710961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS03485 (CHBNIII6_06650) uvrA 702456..705287 (-) 2832 WP_110430708.1 excinuclease ABC subunit UvrA Machinery gene
  K6J69_RS03490 (CHBNIII6_06660) ssb 705440..705961 (+) 522 WP_050846025.1 single-stranded DNA-binding protein Machinery gene
  K6J69_RS03495 (CHBNIII6_06670) qatD 706189..706920 (-) 732 WP_110430707.1 Qat anti-phage system TatD family nuclease QatD -
  K6J69_RS03500 (CHBNIII6_06680) qatC 706917..708233 (-) 1317 WP_110430706.1 Qat anti-phage system QueC-like protein QatC -
  K6J69_RS03505 (CHBNIII6_06690) - 708233..708973 (-) 741 WP_110430705.1 hypothetical protein -
  K6J69_RS03510 (CHBNIII6_06700) - 708977..710743 (-) 1767 WP_110430704.1 P-loop NTPase fold protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19159.94 Da        Isoelectric Point: 5.2649

>NTDB_id=59920 K6J69_RS03490 WP_050846025.1 705440..705961(+) (ssb) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGNDMGGAPQSSYQARQTNNGGSYQSSRSAPQSATSQPATPQA
EPPMDGFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=59920 K6J69_RS03490 WP_050846025.1 705440..705961(+) (ssb) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCGGAGATTTGCGGCGAATACTTGCGCAAAGGTTCTCAAGTGTATGTGGAAGGT
CGTTTAAAAACACGTAAATGGCAAGATCAAAATGGTCAAGATCGCTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATGGCAATGATATGGGCGGCGCACCACAATCCTCTTACCAAGCTCGTC
AAACTAACAATGGTGGTAGTTATCAATCATCTCGTTCTGCGCCACAATCAGCCACATCACAACCAGCAACACCACAGGCT
GAGCCACCAATGGACGGATTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.674

100

0.688
  ssb Vibrio cholerae strain A1552

55.866

100

0.578
  ssb Neisseria gonorrhoeae MS11

51.124

100

0.526
  ssb Neisseria meningitidis MC58

50.562

100

0.52

Multiple sequence alignment