Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KFZ60_RS21700 Genome accession   NZ_CP098231
Coordinates   4472360..4472896 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain XJ34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4467360..4477896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ60_RS21680 (KFZ60_21600) soxR 4469089..4469553 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  KFZ60_RS21685 (KFZ60_21605) soxS 4469639..4469962 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KFZ60_RS21690 (KFZ60_21610) pdeC 4469965..4471551 (-) 1587 WP_045177302.1 c-di-GMP phosphodiesterase PdeC -
  KFZ60_RS21695 (KFZ60_21615) yjcB 4471980..4472261 (+) 282 WP_001362074.1 YjcB family protein -
  KFZ60_RS21700 (KFZ60_21620) ssb 4472360..4472896 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KFZ60_RS21705 (KFZ60_21625) uvrA 4473151..4475973 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  KFZ60_RS21710 (KFZ60_21630) yjbR 4476008..4476364 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KFZ60_RS21715 (KFZ60_21635) yjbQ 4476368..4476784 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KFZ60_RS21720 (KFZ60_21640) aphA 4476895..4477608 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=598766 KFZ60_RS21700 WP_000168305.1 4472360..4472896(-) (ssb) [Escherichia coli strain XJ34]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=598766 KFZ60_RS21700 WP_000168305.1 4472360..4472896(-) (ssb) [Escherichia coli strain XJ34]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGCGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489