Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5K95_RS05420 Genome accession   NZ_CP081946
Coordinates   1181517..1182044 (-) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A6L5BQP5
Organism   Pseudomonas sp. DR48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1176517..1187044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K95_RS05400 (K5K95_05400) - 1176783..1177211 (+) 429 WP_222588664.1 DUF350 domain-containing protein -
  K5K95_RS05405 (K5K95_05405) - 1177231..1177950 (+) 720 WP_222588665.1 DUF1190 domain-containing protein -
  K5K95_RS05410 (K5K95_05410) - 1177962..1179119 (+) 1158 WP_222588666.1 glutathionylspermidine synthase family protein -
  K5K95_RS05415 (K5K95_05415) - 1179240..1181450 (+) 2211 WP_222588667.1 OsmC domain/YcaO domain-containing protein -
  K5K95_RS05420 (K5K95_05420) ssb 1181517..1182044 (-) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  K5K95_RS05425 (K5K95_05425) - 1182054..1183451 (-) 1398 WP_046053254.1 MFS transporter -
  K5K95_RS05430 (K5K95_05430) uvrA 1183643..1186477 (+) 2835 WP_222588668.1 excinuclease ABC subunit UvrA -
  K5K95_RS05435 (K5K95_05435) bfr 1186543..1187007 (-) 465 WP_090179226.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=598638 K5K95_RS05420 WP_010467282.1 1181517..1182044(-) (ssb) [Pseudomonas sp. DR48]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=598638 K5K95_RS05420 WP_010467282.1 1181517..1182044(-) (ssb) [Pseudomonas sp. DR48]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACGAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAAGTGGCCGAGATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACAGAAATCGTGGTCGACATGCAAGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGTCCGCAGCAATCGGCACCGCAACAGTCGCGTCAGGCTCCGCCTCCACAGCAGGCAGCGCCG
CAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491