Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5K89_RS26050 Genome accession   NZ_CP081944
Coordinates   5761787..5762302 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas sp. DR208     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5756787..5767302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K89_RS26025 (K5K89_26025) - 5757030..5758139 (-) 1110 WP_222540505.1 DUF3182 family protein -
  K5K89_RS26030 (K5K89_26030) - 5758311..5759270 (-) 960 WP_071489840.1 GlxA family transcriptional regulator -
  K5K89_RS26035 (K5K89_26035) - 5759367..5759927 (+) 561 WP_071489839.1 cysteine hydrolase family protein -
  K5K89_RS26040 (K5K89_26040) tam 5759949..5760710 (-) 762 WP_222540506.1 trans-aconitate 2-methyltransferase -
  K5K89_RS26045 (K5K89_26045) - 5760812..5761729 (+) 918 WP_222540507.1 LysR family transcriptional regulator -
  K5K89_RS26050 (K5K89_26050) ssb 5761787..5762302 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  K5K89_RS26055 (K5K89_26055) - 5762312..5763706 (-) 1395 WP_071489835.1 MFS transporter -
  K5K89_RS26060 (K5K89_26060) uvrA 5763885..5766719 (+) 2835 WP_071489834.1 excinuclease ABC subunit UvrA -
  K5K89_RS26065 (K5K89_26065) bfr 5766785..5767249 (-) 465 WP_033900044.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=598622 K5K89_RS26050 WP_003232445.1 5761787..5762302(-) (ssb) [Pseudomonas sp. DR208]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=598622 K5K89_RS26050 WP_003232445.1 5761787..5762302(-) (ssb) [Pseudomonas sp. DR208]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACGTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCAGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCCGCTCCGCGTCCACAGC
AGTCGCGCCCGCAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAACAGGCCGCGCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474