Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5R88_RS17660 Genome accession   NZ_CP081943
Coordinates   3886433..3886957 (-) Length   174 a.a.
NCBI ID   WP_008041307.1    Uniprot ID   J2UD93
Organism   Pseudomonas sp. MM213     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3881433..3891957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5R88_RS17640 (K5R88_17535) - 3881555..3881983 (+) 429 WP_008030949.1 DUF350 domain-containing protein -
  K5R88_RS17645 (K5R88_17540) - 3882002..3882715 (+) 714 WP_192228087.1 DUF1190 domain-containing protein -
  K5R88_RS17650 (K5R88_17545) - 3882728..3883885 (+) 1158 WP_226298132.1 glutathionylspermidine synthase family protein -
  K5R88_RS17655 (K5R88_17550) - 3884042..3886246 (+) 2205 WP_226298133.1 OsmC domain/YcaO domain-containing protein -
  K5R88_RS17660 (K5R88_17555) ssb 3886433..3886957 (-) 525 WP_008041307.1 single-stranded DNA-binding protein Machinery gene
  K5R88_RS17665 (K5R88_17560) - 3886967..3888364 (-) 1398 WP_008030907.1 MFS transporter -
  K5R88_RS17670 (K5R88_17565) uvrA 3888556..3891390 (+) 2835 WP_008041305.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19299.44 Da        Isoelectric Point: 5.9314

>NTDB_id=598590 K5R88_RS17660 WP_008041307.1 3886433..3886957(-) (ssb) [Pseudomonas sp. MM213]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQQAPRPQQSAPQQSRPAPQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=598590 K5R88_RS17660 WP_008041307.1 3886433..3886957(-) (ssb) [Pseudomonas sp. MM213]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCGGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAACAACTACCAGCAGTCCGCTCCGGCTC
CACGCCAGCAGCAGGCGCCGCGTCCGCAGCAGTCGGCACCGCAACAGTCGCGTCCGGCTCCACAGCAGGCCGCTCCTCAG
CCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2UD93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.609

100

0.609
  ssb Glaesserella parasuis strain SC1401

48.634

100

0.511
  ssb Neisseria meningitidis MC58

46.667

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.477