Detailed information NTG0598588

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: K5R88_RS16610
• Genome accession: NZ_CP081943
• Coordinates: 3659079..3660410 (+)
• Length: 443 a.a.
• NCBI ID: WP_207285527.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MM213
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3654079..3665410

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5R88_RS16585 (K5R88_16480)	pgeF	3654270..3654995 (-)	726	WP_223434753.1	peptidoglycan editing factor PgeF	-
K5R88_RS16590 (K5R88_16485)	rluD	3654992..3655954 (-)	963	WP_008028788.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
K5R88_RS16595 (K5R88_16490)	-	3656106..3657128 (+)	1023	WP_008028792.1	outer membrane protein assembly factor BamD	-
K5R88_RS16600 (K5R88_16495)	-	3657264..3657497 (+)	234	WP_008028794.1	PP0621 family protein	-
K5R88_RS16605 (K5R88_16500)	pilS	3657487..3659076 (+)	1590	WP_226298063.1	ATP-binding protein	Regulator
K5R88_RS16610 (K5R88_16505)	pilR	3659079..3660410 (+)	1332	WP_207285527.1	sigma-54 dependent transcriptional regulator	Regulator
K5R88_RS16615 (K5R88_16510)	thiO	3660540..3661640 (-)	1101	WP_226298064.1	glycine oxidase ThiO	-
K5R88_RS16620 (K5R88_16515)	-	3661696..3662094 (-)	399	WP_008028801.1	type IV pilin protein	-
K5R88_RS16625 (K5R88_16520)	-	3662109..3665222 (-)	3114	WP_226298065.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 443 a.a.
• Molecular weight: 49417.84 Da
• Isoelectric Point: 6.8345

>NTDB_id=598588 K5R88_RS16610 WP_207285527.1 3659079..3660410(+) (pilR) [Pseudomonas sp. MM213]
MCPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEALALLKRETFDLCLTDMRLPDGTGLELVQHIQQRAPNLPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRMPAPGAAIDRRLLGDSLPMRSLRKQIDKLARSQAPIYIS
GESGSGKELVARLIHEQGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAQGGTLFLDEVADLPLS
MQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIESLAGHVLK
RLAAASGQPAPKLHPQALEALKSYRFPGNVRELENMLERAHTLCDNKQIEASDLRLAEGNCSADSGVPDLTQIDNLEDYL
ENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKFGLD

Nucleotide

• Length: 1332 bp

>NTDB_id=598588 K5R88_RS16610 WP_207285527.1 3659079..3660410(+) (pilR) [Pseudomonas sp. MM213]
ATGTGTCCACGGCAAAAAGTCCTGATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTTCAGCGCCCGTAACCTCGGCGAAGCCCTGGCGCTGTTGAAGCGTGAGACGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCGGACGGCACCGGTCTTGAACTGGTGCAACATATCCAGCAACGCGCCCCAAACCTGCCGGTGGCC
ATGATTACCGCCTACGGCAGCCTCGAAACGGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAACCGGT
GGACCTCACGCGGCTGCGCGAACTGGTCACCAGCGCCCTGCGTATGCCGGCACCGGGCGCAGCCATCGACCGACGGTTGC
TGGGCGATTCGCTGCCCATGCGCAGCCTGCGTAAACAAATCGACAAACTGGCCCGCAGTCAGGCGCCGATCTACATCAGC
GGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGACTGATCCACGAACAAGGACCGCGCGCCAACCAGCCGTTTGTCCC
GGTCAATTGCGGCGCGATACCGTCGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAACCCGGACTGTTCCAGGCCGCCCAGGGAGGCACGCTGTTCCTCGACGAAGTGGCCGACTTGCCACTGTCG
ATGCAGGTCAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTTCGCAGCGTTGGCGGCCAACAGGAAACCGTGGTCGATGT
GCGGATCCTCTGCGCCACCCACAAAGACCTCGACGCCGAAGTCGCCGCTGAACGCTTTCGCCAGGATTTGTATTACCGGC
TGAATGTGATCGAACTGCGGGTTCCGCCTTTGCGCGAGCGCCGCGACGACATCGAGTCATTGGCCGGTCATGTGCTCAAG
CGTCTGGCGGCAGCCAGCGGCCAACCCGCCCCGAAGCTCCACCCACAAGCGCTTGAAGCGCTGAAAAGCTATCGCTTTCC
GGGCAATGTGCGGGAACTGGAGAACATGCTCGAACGCGCCCACACCCTGTGCGACAACAAGCAGATCGAAGCCAGCGACC
TGCGACTGGCCGAAGGCAATTGCAGCGCCGACAGCGGTGTGCCGGACCTGACGCAGATCGACAATCTGGAAGACTATCTG
GAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTTGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCAGCGATTGAA
TTTGTCGTTTCGGTCGATGCGTTACAGGTTGAAGAAATTCGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (400-440)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.555	100	0.786
pilR	Acinetobacter baumannii strain A118	48.913	100	0.508
luxO	Vibrio cholerae strain A1552	36.404	100	0.366