Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   K5R88_RS16605 Genome accession   NZ_CP081943
Coordinates   3657487..3659076 (+) Length   529 a.a.
NCBI ID   WP_226298063.1    Uniprot ID   -
Organism   Pseudomonas sp. MM213     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3652487..3664076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5R88_RS16585 (K5R88_16480) pgeF 3654270..3654995 (-) 726 WP_223434753.1 peptidoglycan editing factor PgeF -
  K5R88_RS16590 (K5R88_16485) rluD 3654992..3655954 (-) 963 WP_008028788.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K5R88_RS16595 (K5R88_16490) - 3656106..3657128 (+) 1023 WP_008028792.1 outer membrane protein assembly factor BamD -
  K5R88_RS16600 (K5R88_16495) - 3657264..3657497 (+) 234 WP_008028794.1 PP0621 family protein -
  K5R88_RS16605 (K5R88_16500) pilS 3657487..3659076 (+) 1590 WP_226298063.1 ATP-binding protein Regulator
  K5R88_RS16610 (K5R88_16505) pilR 3659079..3660410 (+) 1332 WP_207285527.1 sigma-54 dependent transcriptional regulator Regulator
  K5R88_RS16615 (K5R88_16510) thiO 3660540..3661640 (-) 1101 WP_226298064.1 glycine oxidase ThiO -
  K5R88_RS16620 (K5R88_16515) - 3661696..3662094 (-) 399 WP_008028801.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58499.39 Da        Isoelectric Point: 7.0017

>NTDB_id=598587 K5R88_RS16605 WP_226298063.1 3657487..3659076(+) (pilS) [Pseudomonas sp. MM213]
MIAETSSPGSKQAQRLLRLYHLYRLSVGITLVLLISSNLDNQLLTFANDSLLRSGSWLYLVLNILLVVFFENTRRPAQLF
GLALIDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRSRIGLLIAAVGALGIVGLSFLLSFSHPASPNDYLQAGTLG
VLCFAAALLVQGLIQRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDGQLRVQLANHSALILLGRDKLEGQRID
DCSPILVERLQLWQNNPTLRPQSLKIANSGLELQPSFIALAQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEQFVADSRESALDR
QQIHLRIGSGDFKTLMDPNQLTQILDNLLRNAWRHSAQVHDQAQVWLDLFVDPDSQLPIIEVRDDGPGVAPDQQVHLFEP
FYTTSAQGTGLGLYLSRELCESNQARLDFKPRHDGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=598587 K5R88_RS16605 WP_226298063.1 3657487..3659076(+) (pilS) [Pseudomonas sp. MM213]
GTGATCGCTGAGACGTCCAGTCCCGGCAGCAAACAGGCTCAGCGACTGCTGCGCCTTTATCACCTCTACCGCCTAAGCGT
CGGCATCACCTTGGTGCTGCTGATCTCCAGCAACCTGGACAACCAGTTGCTGACGTTCGCCAATGACAGCCTGTTGCGCA
GTGGCAGCTGGCTGTACCTGGTGCTGAACATCTTGCTGGTGGTCTTCTTCGAGAACACTCGCCGCCCGGCGCAATTGTTC
GGCCTGGCGCTGATTGATGTCCTGCTGCTGTGTGGCTTGTTCTACGCCGCCGGCGGTGTCGCCAGCGCCATCGGCAACTT
GCTGATCGTCTCGGTGGCCATCAGCAACACCTTGTTGCGAAGCCGCATCGGCCTGCTGATCGCCGCCGTGGGCGCGCTCG
GCATCGTCGGGCTGAGCTTTCTCCTGAGTTTCAGCCATCCCGCCAGCCCCAACGATTACCTGCAAGCCGGCACCCTCGGT
GTGTTGTGCTTTGCCGCGGCGTTGCTGGTGCAAGGCTTGATCCAGCGCCTGGAAGTCAGCGAAACCCTCGCCGAACAACG
GGCCAGCGAAGTGGTGGGCCTCGAAGCCCTCAATGCATTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACG
GCCAACTGCGGGTGCAATTGGCCAACCACAGCGCGCTGATCTTACTGGGCCGAGACAAACTCGAAGGCCAACGGATCGAC
GACTGCTCGCCCATTCTGGTCGAACGCCTGCAACTGTGGCAGAACAATCCGACGCTGCGCCCCCAGAGCCTGAAAATCGC
CAACAGCGGCCTGGAACTGCAACCGAGCTTCATTGCCCTGGCCCAAAGCCCACACCACCAAACCCTGGTCTTCCTTGAAG
ATCTCGCACAAATCGCCCAACAGGCCCAACAACTGAAGCTCGCCGCTTTGGGTCGCCTGACGGCCGGTATCGCCCACGAA
ATTCGCAATCCTTTGGGCGCCATTAGTCATGCCGCTCAGCTATTGCAGGAATCGGAGGAACTGAACGGCGCGGATCGACG
TCTGACCCAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGTACCGCAACGACTCGATCTGAAGCCGTGGCTGGAGCAGTTCGTGGCCGACAGTCGCGAAAGTGCGCTCGATCGT
CAGCAGATTCACCTGCGCATCGGTTCAGGCGACTTCAAAACCCTGATGGACCCGAACCAGCTCACCCAGATTCTCGACAA
TTTGTTGCGCAACGCCTGGCGTCATAGCGCTCAGGTCCACGATCAGGCGCAGGTCTGGCTCGATTTGTTTGTCGACCCCG
ACAGCCAGTTGCCGATCATCGAGGTTCGGGACGATGGCCCCGGCGTGGCACCGGACCAGCAGGTGCATTTGTTCGAACCG
TTCTATACCACCAGCGCCCAAGGCACAGGCCTGGGGCTGTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAGGCCCGCCT
AGACTTCAAGCCACGCCATGATGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601