Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5Q02_RS08350 Genome accession   NZ_CP081942
Coordinates   1849857..1850357 (+) Length   166 a.a.
NCBI ID   WP_042553302.1    Uniprot ID   A0A7Y9XRH4
Organism   Pseudomonas sp. MM211     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1844857..1855357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Q02_RS08335 (K5Q02_08310) bfr 1844965..1845429 (+) 465 WP_225838200.1 bacterioferritin -
  K5Q02_RS08340 (K5Q02_08315) uvrA 1845486..1848320 (-) 2835 WP_225838202.1 excinuclease ABC subunit UvrA -
  K5Q02_RS08345 (K5Q02_08320) - 1848453..1849841 (+) 1389 WP_225838204.1 MFS transporter -
  K5Q02_RS08350 (K5Q02_08325) ssb 1849857..1850357 (+) 501 WP_042553302.1 single-stranded DNA-binding protein Machinery gene
  K5Q02_RS08355 (K5Q02_08330) - 1850424..1850771 (-) 348 WP_225838206.1 VanZ family protein -
  K5Q02_RS08360 (K5Q02_08335) - 1851035..1851919 (+) 885 WP_225838208.1 sugar nucleotide-binding protein -
  K5Q02_RS08365 (K5Q02_08340) - 1851912..1852841 (+) 930 WP_225838210.1 NAD-dependent epimerase/dehydratase family protein -
  K5Q02_RS08370 (K5Q02_08345) - 1853099..1853791 (-) 693 WP_225838211.1 OmpW family outer membrane protein -
  K5Q02_RS08375 (K5Q02_08350) - 1853913..1854434 (-) 522 WP_225838213.1 DUF3299 domain-containing protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18489.54 Da        Isoelectric Point: 5.9540

>NTDB_id=598563 K5Q02_RS08350 WP_042553302.1 1849857..1850357(+) (ssb) [Pseudomonas sp. MM211]
MARGVNKVILVGTCGQDPETRYLPSGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGVKRYTTEIIVDMQGTMQLLGGRPDNAGGGDSAPRQSRPAPQREPQQQAPRQSAPQQQKPQPAQDYDSF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=598563 K5Q02_RS08350 WP_042553302.1 1849857..1850357(+) (ssb) [Pseudomonas sp. MM211]
ATGGCCCGTGGGGTTAACAAAGTTATTCTGGTCGGTACCTGCGGACAGGATCCGGAAACGCGCTATCTGCCCAGCGGCAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACGGACAAGCAGACTGGGCAGAAGGTCGAAAAGACCGAGT
GGCACCGCGTTTCGCTGTTCGGCAAGGTTGCGGAAATTGCCGGTGAGTATCTGCGCAAGGGTTCTCAGGTCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGTGTGAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTTGGCGGCCGCCCGGACAACGCGGGCGGTGGCGACTCCGCCCCGCGTCAGTCGCGCCCGGCACCGCAGC
GCGAGCCGCAGCAACAGGCTCCGCGTCAGTCCGCTCCGCAGCAGCAGAAGCCGCAGCCCGCTCAGGACTACGACAGCTTC
GATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y9XRH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.18

100

0.602
  ssb Glaesserella parasuis strain SC1401

46.196

100

0.512
  ssb Neisseria meningitidis MC58

46.023

100

0.488
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.488