Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K5Q02_RS00880 Genome accession   NZ_CP081942
Coordinates   197936..199276 (+) Length   446 a.a.
NCBI ID   WP_225835480.1    Uniprot ID   -
Organism   Pseudomonas sp. MM211     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 192936..204276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Q02_RS00855 (K5Q02_00850) pgeF 193102..193842 (-) 741 WP_225835471.1 peptidoglycan editing factor PgeF -
  K5Q02_RS00860 (K5Q02_00855) rluD 193839..194813 (-) 975 WP_225835472.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K5Q02_RS00865 (K5Q02_00860) - 194961..195962 (+) 1002 WP_225835473.1 outer membrane protein assembly factor BamD -
  K5Q02_RS00870 (K5Q02_00865) - 196107..196349 (+) 243 WP_225835475.1 PP0621 family protein -
  K5Q02_RS00875 (K5Q02_00870) pilS 196339..197931 (+) 1593 WP_225835478.1 ATP-binding protein Regulator
  K5Q02_RS00880 (K5Q02_00875) pilR 197936..199276 (+) 1341 WP_225835480.1 sigma-54 dependent transcriptional regulator Regulator
  K5Q02_RS00885 (K5Q02_00880) thiO 199503..200603 (-) 1101 WP_225835481.1 glycine oxidase ThiO -
  K5Q02_RS24385 (K5Q02_00890) - 201307..201816 (+) 510 WP_329959549.1 GspH/FimT family pseudopilin -
  K5Q02_RS00905 (K5Q02_00895) pilV 201831..202397 (+) 567 WP_225835484.1 type IV pilus modification protein PilV -
  K5Q02_RS00910 (K5Q02_00900) - 202394..203242 (+) 849 WP_225835486.1 PilW family protein -
  K5Q02_RS00915 (K5Q02_00905) - 203239..203883 (+) 645 WP_225835488.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49792.20 Da        Isoelectric Point: 5.6584

>NTDB_id=598550 K5Q02_RS00880 WP_225835480.1 197936..199276(+) (pilR) [Pseudomonas sp. MM211]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGTGLDIVLHIQQRYPQTPVAM
ITAFGSLDTAINALKAGAFDFLTKPVDLGRLRELVTTALRLREGDDEDAQPGASRLLGESPPMRTLRAQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRRERAFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGSLFLDEVADL
PLTMQVKLLRAIQEKAVRSVGGQQEVVVDTRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADV
MLKRLNEGIGLPPVKLDGPALDKLKSYRFPGNVRELENMLERAYTLCEGDVICANDLRLADAAPAGENGDASLAQIDNIE
DYLEDVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=598550 K5Q02_RS00880 WP_225835480.1 197936..199276(+) (pilR) [Pseudomonas sp. MM211]
ATGAACCGCCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAGTTGCTGGAGATCACCCTCGGGCGCATGAA
ACTTGATACGCGCAGCGCCCGTAACGTCAAAGAGGCGCGCGAATGGCTGGCCAAGGAGCCCTTCGATCTGTGCCTCACCG
ACATGCGCCTACCCGACGGAACCGGCCTGGATATCGTGCTGCATATCCAGCAGCGTTATCCGCAAACACCAGTGGCCATG
ATCACTGCCTTCGGCAGCCTGGATACCGCGATCAACGCTCTCAAGGCTGGTGCTTTTGACTTTCTCACCAAACCTGTCGA
TCTAGGCCGCCTGCGCGAACTGGTGACCACCGCCCTGCGCCTGCGTGAAGGTGACGATGAAGACGCACAACCAGGCGCAA
GCAGGCTGCTCGGCGAATCACCGCCCATGCGCACCCTGCGGGCGCAGATCCAGAAACTGGCACGCAGCCAGGCACCGGTG
TATATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCCGCTTGATTCACGAACAAGGGCCACGCCGCGAACGCGC
CTTCGTACCGGTCAACTGTGGCGCCATCCCTTCAGAGCTCATGGAAAGCGAGTTCTTCGGTCACAAGAAAGGCAGCTTCA
CTGGCGCCATCGAAGACAAGCAGGGCCTGTTTCAGGCCGCCAACGGTGGCAGCCTGTTCCTCGACGAAGTGGCCGACCTA
CCACTGACCATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAAGCCGTCCGCAGCGTTGGTGGCCAGCAGGAGGTCGT
GGTCGACACCCGCATCCTCTGCGCCACCCACAAGGATCTGGCCGCCGAAGTCGCTGCCGGGCGCTTCCGTCAGGATCTGT
ACTACCGCCTCAACGTCATCGAACTGCGCGTGCCGCCACTGCGCGAACGTCGCGAGGACATTCCACTGCTGGCCGATGTG
ATGCTCAAACGCCTGAACGAAGGCATCGGCCTGCCACCCGTAAAGCTCGATGGGCCAGCCCTCGACAAGCTCAAGAGCTA
CCGCTTTCCCGGTAACGTGCGCGAACTGGAAAACATGCTCGAGCGCGCCTACACCCTGTGTGAAGGCGACGTGATCTGCG
CCAACGACCTGCGCCTGGCCGACGCCGCACCGGCAGGCGAAAACGGCGATGCCAGCCTGGCGCAGATCGACAACATCGAA
GACTACCTGGAAGACGTCGAGCGCAAACTGATCATGCAGGCCCTCGAAGAAACCCGCTGGAATCGCACCGCCGCAGCCCA
GCGCCTGGGCCTGAGCTTTCGTTCGATGCGCTATCGTCTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.426

100

0.854
  pilR Acinetobacter baumannii strain A118

50

100

0.516
  luxO Vibrio cholerae strain A1552

36.771

100

0.368