Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   K5Q02_RS00875 Genome accession   NZ_CP081942
Coordinates   196339..197931 (+) Length   530 a.a.
NCBI ID   WP_225835478.1    Uniprot ID   -
Organism   Pseudomonas sp. MM211     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 191339..202931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Q02_RS00855 (K5Q02_00850) pgeF 193102..193842 (-) 741 WP_225835471.1 peptidoglycan editing factor PgeF -
  K5Q02_RS00860 (K5Q02_00855) rluD 193839..194813 (-) 975 WP_225835472.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K5Q02_RS00865 (K5Q02_00860) - 194961..195962 (+) 1002 WP_225835473.1 outer membrane protein assembly factor BamD -
  K5Q02_RS00870 (K5Q02_00865) - 196107..196349 (+) 243 WP_225835475.1 PP0621 family protein -
  K5Q02_RS00875 (K5Q02_00870) pilS 196339..197931 (+) 1593 WP_225835478.1 ATP-binding protein Regulator
  K5Q02_RS00880 (K5Q02_00875) pilR 197936..199276 (+) 1341 WP_225835480.1 sigma-54 dependent transcriptional regulator Regulator
  K5Q02_RS00885 (K5Q02_00880) thiO 199503..200603 (-) 1101 WP_225835481.1 glycine oxidase ThiO -
  K5Q02_RS24385 (K5Q02_00890) - 201307..201816 (+) 510 WP_329959549.1 GspH/FimT family pseudopilin -
  K5Q02_RS00905 (K5Q02_00895) pilV 201831..202397 (+) 567 WP_225835484.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58532.87 Da        Isoelectric Point: 8.9880

>NTDB_id=598549 K5Q02_RS00875 WP_225835478.1 196339..197931(+) (pilS) [Pseudomonas sp. MM211]
MPTRALALSGLQGRRIFRLYHLYRLLIGVLLVLLVSADLDAELLELAHVPLFRGASWLYLILNIFVALIAHNPRSLVQVF
GVALADVILLSALFYAGGGTPSGIGNLLIVAVAIANILLRGRIGILIAASAAIGLIYLTFYLSLGHPQASSQYVQAGALG
ALCFTAALFVQGVTRRLQVSENLAEQRAADVADLEALNNLILQRMRTGILVVDEQHRVLLANQAALSLLGREHLAGKILD
PHCTELVKRLQYWLENTSLRPASLQARADGPTLQPSFIALQRGGQRHTLILLDDISQIAQQAQQLKLVALGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLHGPDLRLAQIIQDHSRRMNLIIENVLQLSRRRQAEPQLLDLKYWLHRFAAEFRSTAPAS
KILHLAIEGSSIQTRMDPNQLTQVITNLVQNGLRYSAQHNPKGQVWLKLFRDPHSDLPVLEVLDDGPGVPPDQLHHIFEP
FYTTENKGTGLGLYISRELCESNQAHLHYQSREGNGACFRITFAHPRKMS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=598549 K5Q02_RS00875 WP_225835478.1 196339..197931(+) (pilS) [Pseudomonas sp. MM211]
GTGCCCACTAGAGCTCTCGCGCTAAGCGGCCTTCAGGGACGGCGTATTTTCAGGCTGTATCACCTCTACCGGCTGCTGAT
CGGCGTTTTGCTGGTTCTGCTTGTCTCCGCAGACCTGGATGCAGAACTGCTCGAGCTGGCGCACGTGCCGCTCTTCCGGG
GCGCTAGCTGGCTGTATCTAATCCTCAACATTTTTGTCGCACTGATCGCTCATAACCCGCGCAGTCTGGTTCAAGTGTTT
GGCGTAGCCCTGGCCGACGTGATCCTGCTGTCCGCCCTGTTCTATGCCGGCGGCGGAACACCAAGTGGTATTGGCAACCT
GCTGATCGTTGCAGTGGCGATCGCCAATATCCTCCTGCGCGGGCGAATCGGCATATTGATCGCGGCAAGCGCGGCGATAG
GCCTGATCTACCTGACCTTCTATCTCAGCCTCGGCCATCCGCAGGCCAGCAGCCAGTACGTGCAGGCTGGCGCACTGGGC
GCTCTGTGCTTCACTGCAGCGCTGTTCGTACAAGGTGTGACCCGGCGCCTGCAAGTCAGCGAGAACCTCGCTGAGCAACG
TGCAGCAGATGTGGCGGACCTGGAAGCCCTGAACAACCTGATCCTGCAACGAATGCGCACCGGCATCCTAGTGGTCGACG
AACAGCACCGCGTGCTGCTGGCCAACCAGGCAGCCCTGAGCCTGCTCGGGCGAGAACACCTGGCCGGCAAGATTCTCGAC
CCGCACTGCACCGAGTTGGTCAAACGCCTGCAGTACTGGCTGGAAAACACCAGCCTACGCCCAGCCAGCTTGCAGGCGCG
CGCCGACGGCCCAACCCTGCAGCCCAGCTTCATCGCCTTGCAACGAGGCGGGCAGCGCCACACACTGATCCTGCTCGACG
ATATTTCACAGATCGCCCAGCAAGCTCAGCAGCTCAAACTGGTGGCTCTGGGCCGGCTGACCGCAGGCATCGCCCACGAG
ATTCGTAACCCGCTGGGCGCCATCAGCCACGCCGCACAACTGCTGCAGGAATCCGAAGACCTGCATGGGCCGGATCTGCG
CCTGGCGCAGATCATCCAGGATCACTCCCGGCGCATGAATCTGATCATCGAGAACGTTCTGCAGCTCTCCCGACGGCGTC
AGGCAGAGCCACAACTGCTGGATCTCAAATACTGGCTACATCGCTTCGCCGCCGAGTTTCGCAGCACGGCGCCGGCCTCG
AAAATCCTCCACCTGGCTATCGAAGGCAGCAGCATCCAGACCCGCATGGATCCCAACCAGTTAACCCAGGTGATCACCAA
TCTGGTACAGAACGGCCTGCGTTATAGCGCCCAGCACAATCCCAAGGGCCAGGTGTGGCTGAAACTGTTCCGCGACCCGC
ACAGTGATCTGCCGGTGCTCGAGGTGCTAGATGACGGCCCGGGCGTGCCGCCAGACCAACTGCATCACATCTTCGAGCCT
TTCTACACCACGGAAAACAAAGGCACCGGTCTAGGCCTGTATATTTCCCGCGAGCTTTGCGAAAGCAATCAGGCTCACCT
TCACTACCAATCACGCGAAGGCAACGGAGCCTGTTTCCGCATTACCTTCGCGCATCCGCGAAAGATGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.717

100

0.647