Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   K5O18_RS00480 Genome accession   NZ_CP081939
Coordinates   94815..96137 (+) Length   440 a.a.
NCBI ID   WP_035688106.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain p4chr1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 89815..101137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS00455 (K5O18_00455) - 89916..92465 (-) 2550 WP_110479407.1 penicillin-binding protein 1A -
  K5O18_RS00460 (K5O18_00460) - 92624..93391 (+) 768 WP_035688099.1 hypothetical protein -
  K5O18_RS00465 (K5O18_00465) - 93421..93933 (+) 513 WP_046097217.1 PilN domain-containing protein -
  K5O18_RS00470 (K5O18_00470) - 93926..94447 (+) 522 WP_133247367.1 hypothetical protein -
  K5O18_RS00475 (K5O18_00475) - 94447..94806 (+) 360 WP_017806828.1 hypothetical protein -
  K5O18_RS00480 (K5O18_00480) comE 94815..96137 (+) 1323 WP_035688106.1 type IV pilus secretin PilQ Machinery gene
  K5O18_RS00485 (K5O18_00485) aroK 96371..96898 (+) 528 WP_035688108.1 shikimate kinase AroK -
  K5O18_RS00490 (K5O18_00490) aroB 96915..98003 (+) 1089 WP_110479404.1 3-dehydroquinate synthase -
  K5O18_RS00495 (K5O18_00495) - 98009..98899 (+) 891 WP_017806825.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  K5O18_RS00500 (K5O18_00500) - 98871..99176 (-) 306 WP_035688115.1 DciA family protein -
  K5O18_RS00505 (K5O18_00505) secM 99282..99593 (+) 312 WP_194743005.1 secA translation cis-regulator SecM -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 48606.59 Da        Isoelectric Point: 6.1204

>NTDB_id=598520 K5O18_RS00480 WP_035688106.1 94815..96137(+) (comE) [Avibacterium paragallinarum strain p4chr1]
MKLPNIIKNILLFFLILSYPFRQVNASDENNTFSVHLKQAPLVDTVQYLAGYQKINLVIDDELSGSISLQLQNTTLLQLL
KSIAEIKHLRFWENNGIYYLSQSQATNQENVVLNSSTEIATSADMLITSIKLHYAKASEVMKALTSGNGSLLTANGSISF
DERNNLLIIQDEAKKIKQIRKLVADMDKPIQQIIIEARIVTISDESLKELGVRWGIFSPSDISHSVSGSLNANGFSNITD
NLNINFATSSNPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVNNGKNDTQSIE
FREAVLGLEVTPHLLKHNGILLDLVVSQNAPGGRVSYGENEVISIDKQEINTQVFAQDGETIVLGGIFHDTITKALDKVP
ILGDIPGIKRLFSKEVERHQKRELVIFVTPRLIRSGTVEE

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=598520 K5O18_RS00480 WP_035688106.1 94815..96137(+) (comE) [Avibacterium paragallinarum strain p4chr1]
ATGAAGTTACCAAATATAATAAAGAATATTCTTTTATTTTTTCTTATTCTATCCTATCCATTTAGACAGGTTAATGCAAG
TGACGAAAATAATACATTCTCTGTTCATTTAAAGCAAGCTCCATTAGTAGATACTGTACAATATTTAGCTGGGTATCAAA
AAATCAATTTAGTCATAGATGATGAATTGTCTGGTTCAATATCTTTGCAATTGCAAAATACAACATTACTTCAATTATTA
AAATCTATCGCTGAAATAAAACATTTGCGGTTTTGGGAAAATAATGGGATATATTATTTAAGTCAGTCGCAAGCAACTAA
TCAAGAAAATGTAGTGTTAAATTCATCAACAGAAATAGCAACATCAGCAGATATGTTAATAACTTCAATAAAGTTGCACT
ATGCCAAAGCATCCGAGGTAATGAAAGCCCTCACTTCAGGGAATGGCTCTTTATTAACAGCAAATGGAAGTATAAGTTTT
GATGAACGCAATAATTTACTCATTATCCAAGATGAAGCTAAAAAAATAAAACAAATTAGGAAATTGGTAGCGGATATGGA
TAAACCCATTCAGCAAATTATTATTGAAGCTCGTATTGTCACAATTAGCGATGAAAGTTTAAAAGAATTGGGCGTTAGAT
GGGGAATTTTTTCTCCCTCAGATATAAGCCATAGCGTTTCTGGAAGTTTAAATGCAAATGGATTCTCAAATATTACGGAT
AATCTAAATATTAATTTTGCGACGAGTTCAAATCCTGCAGGTTCGGTAGCTTTGCAAGTAGCTAAAATTAATGGAAGGTT
ATTAGATTTAGAGTTGACAGCATTAGAAAGAGAAAATAACGTTGAAATTATTGCGAGTCCACGATTATTGACCACAAATA
AGAAAAGTGCAAGTATCAAGCAAGGTACAGAAATCCCCTATGTAGTGAATAATGGAAAAAATGATACGCAGTCTATTGAA
TTCCGAGAAGCTGTACTTGGGCTTGAAGTTACACCTCATTTATTAAAGCATAACGGTATTTTACTTGATCTTGTTGTTAG
CCAGAATGCACCTGGAGGACGAGTATCTTATGGAGAAAATGAGGTGATTTCTATTGATAAACAGGAAATTAATACGCAAG
TCTTTGCACAAGACGGCGAAACGATTGTATTGGGCGGAATTTTCCACGATACGATTACTAAAGCACTTGATAAAGTACCA
ATTTTAGGAGACATACCTGGAATAAAAAGGCTATTTAGTAAGGAAGTCGAGAGACATCAAAAGAGGGAACTCGTTATTTT
TGTTACACCACGCTTAATTCGTAGTGGTACAGTAGAGGAATGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(129-192)

Bacterial type II and III secretion system protein (Secretin)

(274-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

65.023

96.818

0.63
  comE Haemophilus influenzae 86-028NP

64.789

96.818

0.627
  comE Glaesserella parasuis strain SC1401

49.883

97.045

0.484
  pilQ Vibrio campbellii strain DS40M4

40

96.591

0.386
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

40.288

94.773

0.382
  pilQ Vibrio cholerae strain A1552

40.288

94.773

0.382