Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NBY12_RS01745 Genome accession   NZ_CP098223
Coordinates   384545..385081 (+) Length   178 a.a.
NCBI ID   WP_032185683.1    Uniprot ID   -
Organism   Escherichia coli strain Z0117EC0005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 379545..390081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY12_RS01725 (NBY12_01725) aphA 379833..380546 (+) 714 WP_001226928.1 acid phosphatase AphA -
  NBY12_RS01730 (NBY12_01730) yjbQ 380657..381073 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NBY12_RS01735 (NBY12_01735) yjbR 381077..381433 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NBY12_RS01740 (NBY12_01740) uvrA 381468..384290 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  NBY12_RS01745 (NBY12_01745) ssb 384545..385081 (+) 537 WP_032185683.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NBY12_RS01750 (NBY12_01750) yjcB 385181..385462 (-) 282 WP_001295689.1 YjcB family protein -
  NBY12_RS01755 (NBY12_01755) pdeC 385891..387477 (+) 1587 WP_032304297.1 c-di-GMP phosphodiesterase PdeC -
  NBY12_RS01760 (NBY12_01760) soxS 387480..387803 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NBY12_RS01765 (NBY12_01765) soxR 387889..388353 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19005.02 Da        Isoelectric Point: 5.2358

>NTDB_id=598482 NBY12_RS01745 WP_032185683.1 384545..385081(+) (ssb) [Escherichia coli strain Z0117EC0005]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGSNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=598482 NBY12_RS01745 WP_032185683.1 384545..385081(+) (ssb) [Escherichia coli strain Z0117EC0005]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTACGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTAGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.747
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.601
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489