Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NBY15_RS22750 Genome accession   NZ_CP098214
Coordinates   4670308..4670844 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Z0117EC0036     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4665308..4675844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY15_RS22730 (NBY15_22725) soxR 4667037..4667501 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  NBY15_RS22735 (NBY15_22730) soxS 4667587..4667910 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NBY15_RS22740 (NBY15_22735) pdeC 4667946..4669499 (-) 1554 WP_001490707.1 c-di-GMP phosphodiesterase PdeC -
  NBY15_RS22745 (NBY15_22740) yjcB 4669928..4670209 (+) 282 WP_021521174.1 YjcB family protein -
  NBY15_RS22750 (NBY15_22745) ssb 4670308..4670844 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NBY15_RS22755 (NBY15_22750) uvrA 4671099..4673921 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  NBY15_RS22760 (NBY15_22755) yjbR 4673956..4674312 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NBY15_RS22765 (NBY15_22760) yjbQ 4674316..4674732 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NBY15_RS22770 (NBY15_22765) aphA 4674843..4675556 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=598283 NBY15_RS22750 WP_000168305.1 4670308..4670844(-) (ssb) [Escherichia coli strain Z0117EC0036]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=598283 NBY15_RS22750 WP_000168305.1 4670308..4670844(-) (ssb) [Escherichia coli strain Z0117EC0036]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489