Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K5O11_RS08705 Genome accession   NZ_CP081881
Coordinates   1846536..1847165 (+) Length   209 a.a.
NCBI ID   WP_000839133.1    Uniprot ID   A0A1M2IUY6
Organism   Escherichia coli strain WW2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1841536..1852165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O11_RS08685 (K5O11_08680) ycbZ 1841924..1843684 (-) 1761 WP_000156477.1 Lon protease family protein -
  K5O11_RS08690 (K5O11_08685) matP 1843870..1844322 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  K5O11_RS08695 (K5O11_08690) ompA 1844400..1845452 (-) 1053 WP_001346420.1 porin OmpA -
  K5O11_RS08700 (K5O11_08695) sulA 1845809..1846318 (-) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  K5O11_RS08705 (K5O11_08700) sxy/tfoX 1846536..1847165 (+) 630 WP_000839133.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K5O11_RS08710 (K5O11_08705) yccS 1847128..1849290 (-) 2163 WP_000875039.1 YccS family putative transporter -
  K5O11_RS08715 (K5O11_08710) yccF 1849300..1849746 (-) 447 WP_001261235.1 YccF domain-containing protein -
  K5O11_RS08720 (K5O11_08715) helD 1849869..1851923 (+) 2055 WP_001361412.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24161.04 Da        Isoelectric Point: 9.2180

>NTDB_id=598034 K5O11_RS08705 WP_000839133.1 1846536..1847165(+) (sxy/tfoX) [Escherichia coli strain WW2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTIDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=598034 K5O11_RS08705 WP_000839133.1 1846536..1847165(+) (sxy/tfoX) [Escherichia coli strain WW2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCATTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAC
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M2IUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995