Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K6T23_RS21980 Genome accession   NZ_CP081870
Coordinates   4282455..4282991 (-) Length   178 a.a.
NCBI ID   WP_056539912.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain UTDF19-31A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4277455..4287991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T23_RS21960 (K6T23_21975) - 4277801..4278736 (-) 936 WP_162244171.1 YybS family protein -
  K6T23_RS21965 (K6T23_21980) - 4278928..4280967 (-) 2040 WP_238283350.1 methyl-accepting chemotaxis protein -
  K6T23_RS21970 (K6T23_21985) - 4281107..4282066 (+) 960 WP_238283351.1 MBL fold metallo-hydrolase -
  K6T23_RS21975 (K6T23_21990) rpsR 4282175..4282411 (-) 237 WP_048004588.1 30S ribosomal protein S18 -
  K6T23_RS21980 (K6T23_21995) ssbA 4282455..4282991 (-) 537 WP_056539912.1 single-stranded DNA-binding protein Machinery gene
  K6T23_RS21985 (K6T23_22000) rpsF 4283047..4283334 (-) 288 WP_053429896.1 30S ribosomal protein S6 -
  K6T23_RS21990 (K6T23_22005) ychF 4283543..4284643 (-) 1101 WP_048004585.1 redox-regulated ATPase YchF -
  K6T23_RS21995 (K6T23_22010) - 4284924..4285121 (-) 198 WP_048004584.1 DUF951 domain-containing protein -
  K6T23_RS22000 (K6T23_22015) - 4285136..4286059 (-) 924 WP_053429898.1 mechanosensitive ion channel family protein -
  K6T23_RS22005 (K6T23_22020) yyaC 4286274..4286891 (+) 618 WP_053429936.1 spore protease YyaC -
  K6T23_RS22010 (K6T23_22025) - 4286980..4287156 (+) 177 WP_156450693.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19457.16 Da        Isoelectric Point: 4.7821

>NTDB_id=597945 K6T23_RS21980 WP_056539912.1 4282455..4282991(-) (ssbA) [Rossellomorea marisflavi strain UTDF19-31A]
MMNRVVLVGRLTKDPELKYTPSGVAVASFTLAVNRSFTNQSGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRIQTR
NFEGQDGRRVFMTEVVAESVQFLEPRSASQGGDRGGSPSYSGGGGGYQQGNQGGNSFGQNQNQQQRNNNNNNNYTRVDED
PFANDGQPIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=597945 K6T23_RS21980 WP_056539912.1 4282455..4282991(-) (ssbA) [Rossellomorea marisflavi strain UTDF19-31A]
ATGATGAACCGAGTTGTATTAGTGGGCCGATTAACCAAAGACCCTGAACTAAAATATACTCCAAGCGGAGTGGCTGTTGC
CTCATTCACACTGGCAGTGAATCGTTCTTTTACGAATCAATCAGGTGAACGGGAAGCAGATTTTATTAACTGTGTTGTTT
GGCGCCGACCTGCCGAAAACGTAGCGAACTTCCTTAAGAAAGGAAGCCTGGCCGGCGTTGACGGTCGAATCCAGACCCGT
AACTTCGAAGGACAGGATGGACGACGCGTGTTCATGACGGAAGTCGTGGCCGAAAGCGTTCAATTCCTTGAGCCTCGCAG
TGCGAGTCAAGGTGGAGATCGCGGCGGAAGCCCAAGCTATTCTGGCGGCGGTGGTGGTTACCAACAGGGTAACCAAGGTG
GTAACTCATTCGGCCAGAATCAGAATCAACAACAGCGCAACAACAATAATAACAATAACTACACTCGCGTAGATGAAGAT
CCATTCGCAAATGATGGTCAGCCGATCGACATTTCCGATGATGATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.613

100

0.708
  ssb Latilactobacillus sakei subsp. sakei 23K

52.432

100

0.545
  ssb Glaesserella parasuis strain SC1401

36.17

100

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.522

63.483

0.365