Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K5X77_RS06485 Genome accession   NZ_CP081833
Coordinates   1336678..1337181 (-) Length   167 a.a.
NCBI ID   WP_126762176.1    Uniprot ID   A0AAE9XMW7
Organism   Vagococcus lutrae strain BN31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1331678..1342181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5X77_RS06465 (K5X77_06465) - 1333009..1334304 (+) 1296 WP_222316951.1 ISL3 family transposase -
  K5X77_RS06470 (K5X77_06470) dnaB 1334428..1335789 (-) 1362 WP_023606931.1 replicative DNA helicase -
  K5X77_RS06475 (K5X77_06475) rplI 1335819..1336271 (-) 453 WP_023606930.1 50S ribosomal protein L9 -
  K5X77_RS06480 (K5X77_06480) rpsR 1336417..1336656 (-) 240 WP_023606929.1 30S ribosomal protein S18 -
  K5X77_RS06485 (K5X77_06485) ssbA 1336678..1337181 (-) 504 WP_126762176.1 single-stranded DNA-binding protein Machinery gene
  K5X77_RS06490 (K5X77_06490) rpsF 1337224..1337523 (-) 300 WP_126762178.1 30S ribosomal protein S6 -
  K5X77_RS06495 (K5X77_06495) gyrA 1337694..1340171 (-) 2478 WP_222316952.1 DNA gyrase subunit A -
  K5X77_RS06500 (K5X77_06500) gyrB 1340195..1342150 (-) 1956 WP_222316953.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18502.39 Da        Isoelectric Point: 4.9114

>NTDB_id=597657 K5X77_RS06485 WP_126762176.1 1336678..1337181(-) (ssbA) [Vagococcus lutrae strain BN31]
MINNVVLVGRLTKDPDLRYTANGVAVATFTLAIDRPFTNQSGNREADFINTVIWRKPAETLANYARKGTLIGVVGRIQTR
NYENQQGQRVYVTEVVADSFQFLESKSVNEQRRQGSGSDFGAQPNNNQSFNQSSSSMPQQGMPDFGRDSDPFASSAKIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=597657 K5X77_RS06485 WP_126762176.1 1336678..1337181(-) (ssbA) [Vagococcus lutrae strain BN31]
ATGATTAATAATGTCGTACTAGTAGGTAGATTAACTAAAGATCCAGATTTGCGTTATACAGCAAATGGTGTCGCTGTTGC
AACATTCACCTTGGCAATCGATCGTCCATTTACAAATCAAAGTGGTAATCGTGAAGCAGATTTTATCAACACGGTGATTT
GGCGAAAGCCCGCAGAGACATTGGCTAATTATGCACGAAAAGGAACTTTAATTGGTGTTGTAGGACGTATTCAAACACGT
AACTATGAAAACCAACAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCAGATAGTTTCCAATTCTTAGAGTCGAAGTC
AGTCAATGAACAACGACGTCAAGGCTCTGGTTCAGATTTTGGTGCTCAACCTAATAATAACCAAAGTTTTAATCAGTCAT
CATCTTCAATGCCACAACAAGGTATGCCGGATTTTGGTCGTGATTCAGACCCATTCGCATCATCAGCTAAGATTGATATC
TCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.522

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

59.649

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

63.473

0.389
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.371