Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5O10_RS21015 Genome accession   NZ_CP081813
Coordinates   4376049..4376585 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella flexneri strain WW1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4371049..4381585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O10_RS20995 (K5O10_20995) soxR 4372777..4373241 (-) 465 WP_222135338.1 redox-sensitive transcriptional activator SoxR -
  K5O10_RS21000 (K5O10_21000) soxS 4373327..4373650 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  K5O10_RS21005 (K5O10_21005) pdeC 4373653..4375239 (-) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  K5O10_RS21010 (K5O10_21010) - 4375669..4375950 (+) 282 WP_001295689.1 YjcB family protein -
  K5O10_RS21015 (K5O10_21015) ssb 4376049..4376585 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  K5O10_RS21020 (K5O10_21020) uvrA 4376839..4379661 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  K5O10_RS21025 (K5O10_21025) - 4379696..4380052 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  K5O10_RS21030 (K5O10_21030) - 4380056..4380472 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  K5O10_RS21035 (K5O10_21035) aphA 4380583..4381296 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=597509 K5O10_RS21015 WP_000168305.1 4376049..4376585(-) (ssb) [Shigella flexneri strain WW1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=597509 K5O10_RS21015 WP_000168305.1 4376049..4376585(-) (ssb) [Shigella flexneri strain WW1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489