Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NBY25_RS02070 Genome accession   NZ_CP098187
Coordinates   431086..431622 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Z0117EC0117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 426086..436622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY25_RS02050 (NBY25_02050) aphA 426398..427111 (+) 714 WP_001226933.1 acid phosphatase AphA -
  NBY25_RS02055 (NBY25_02055) yjbQ 427222..427638 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NBY25_RS02060 (NBY25_02060) yjbR 427642..427998 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NBY25_RS02065 (NBY25_02065) uvrA 428033..430831 (-) 2799 WP_250781973.1 excinuclease ABC subunit UvrA Machinery gene
  NBY25_RS02070 (NBY25_02070) ssb 431086..431622 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NBY25_RS02075 (NBY25_02075) yjcB 431721..432002 (-) 282 WP_001298294.1 YjcB family protein -
  NBY25_RS02080 (NBY25_02080) pdeC 432431..433984 (+) 1554 WP_001468319.1 c-di-GMP phosphodiesterase PdeC -
  NBY25_RS02085 (NBY25_02085) soxS 434020..434343 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NBY25_RS02090 (NBY25_02090) soxR 434429..434893 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=597475 NBY25_RS02070 WP_000168305.1 431086..431622(+) (ssb) [Escherichia coli strain Z0117EC0117]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=597475 NBY25_RS02070 WP_000168305.1 431086..431622(+) (ssb) [Escherichia coli strain Z0117EC0117]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489