Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J6O44_RS22385 Genome accession   NZ_CP081782
Coordinates   4560324..4560860 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 0H26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4555324..4565860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O44_RS22365 (J6O44_22265) soxR 4557052..4557516 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  J6O44_RS22370 (J6O44_22270) soxS 4557602..4557925 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  J6O44_RS22375 (J6O44_22275) pdeC 4557928..4559514 (-) 1587 WP_001548920.1 c-di-GMP phosphodiesterase PdeC -
  J6O44_RS22380 (J6O44_22280) yjcB 4559944..4560225 (+) 282 WP_001295689.1 YjcB family protein -
  J6O44_RS22385 (J6O44_22285) ssb 4560324..4560860 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  J6O44_RS22390 (J6O44_22290) uvrA 4561114..4563936 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  J6O44_RS22395 (J6O44_22295) yjbR 4563971..4564327 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  J6O44_RS22400 (J6O44_22300) yjbQ 4564331..4564747 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  J6O44_RS22405 (J6O44_22305) aphA 4564858..4565571 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=597464 J6O44_RS22385 WP_000168305.1 4560324..4560860(-) (ssb) [Escherichia coli strain 0H26]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=597464 J6O44_RS22385 WP_000168305.1 4560324..4560860(-) (ssb) [Escherichia coli strain 0H26]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489