Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   K5J94_RS09070 Genome accession   NZ_CP081502
Coordinates   1944862..1945548 (-) Length   228 a.a.
NCBI ID   WP_159545625.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939862..1950548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS09050 dnaI 1940592..1941494 (-) 903 WP_159545619.1 primosomal protein DnaI -
  K5J94_RS09055 - 1941495..1942667 (-) 1173 WP_159545621.1 DnaD domain protein -
  K5J94_RS09060 nrdR 1942654..1943145 (-) 492 WP_159564775.1 transcriptional regulator NrdR -
  K5J94_RS09065 - 1943363..1944853 (-) 1491 WP_159545668.1 HAMP domain-containing histidine kinase -
  K5J94_RS09070 covR 1944862..1945548 (-) 687 WP_159545625.1 two-component system response regulator CovR Regulator
  K5J94_RS09075 - 1945776..1946309 (-) 534 WP_159545627.1 DUF177 domain-containing protein -
  K5J94_RS09080 htpX 1946467..1947360 (-) 894 WP_221912991.1 zinc metalloprotease HtpX -
  K5J94_RS09085 - 1947385..1947939 (-) 555 WP_159545631.1 LemA family protein -
  K5J94_RS09090 rsmG 1948078..1948791 (+) 714 WP_221912993.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  K5J94_RS09095 - 1948856..1950247 (+) 1392 WP_269437423.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26628.60 Da        Isoelectric Point: 4.5956

>NTDB_id=597080 K5J94_RS09070 WP_159545625.1 1944862..1945548(-) (covR) [Streptococcus halichoeri strain Shali_VAS-CPH]
MTKKILIIEDEKNLARFVSLELQHEGYEVCVEDNGREGLETALEKDFDLILLDLMLPEMDGFEITRRLQAEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIETDKKSPNQGIYRDLVLNPQNRSVNRGDDEISLTKREY
DLLSILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=597080 K5J94_RS09070 WP_159545625.1 1944862..1945548(-) (covR) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGACGAAAAAAATTCTCATTATTGAAGATGAAAAAAATCTCGCACGATTTGTTTCACTAGAATTGCAGCACGAAGGTTA
TGAAGTATGCGTCGAAGATAATGGTCGCGAAGGCTTAGAAACAGCTCTTGAAAAAGATTTTGATCTTATCCTTTTAGATT
TAATGTTACCTGAGATGGATGGTTTTGAAATCACTCGGCGCTTGCAGGCAGAAAAGACAACCTACATTATGATGATGACA
GCACGTGATTCCATTATGGATGTGGTTGCGGGGCTAGACCGTGGAGCGGATGACTACATTGTTAAGCCTTTTGCTATCGA
AGAATTGTTAGCACGCATCCGCGCAATCTTTCGTCGTCAAGATATAGAGACAGATAAAAAATCACCAAATCAAGGTATCT
ACCGTGATTTGGTACTTAATCCACAAAACCGGTCGGTTAACCGTGGAGACGATGAAATTTCGTTAACAAAGCGCGAATAC
GATTTGTTGAGTATTTTGATGACCAATATGAACCGTGTGATGACGCGCGAAGAATTACTCTCTAATGTCTGGAAGTATGA
CGAAGCTGTCGAAACAAACGTTGTGGATGTTTACATTCGTTATTTACGTGGGAAAATTGACATGCCTGGACGGGAATCCT
ATATTCAAACCGTACGTGGTATGGGTTATGTGATACGTGAGAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

81.659

100

0.82
  covR Lactococcus lactis subsp. lactis strain DGCC12653

67.401

99.561

0.671
  vicR Streptococcus mutans UA159

43.29

100

0.439
  micA Streptococcus pneumoniae Cp1015

42.857

100

0.434