Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   K5J94_RS07245 Genome accession   NZ_CP081502
Coordinates   1525149..1526453 (-) Length   434 a.a.
NCBI ID   WP_159543975.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520149..1531453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS07220 - 1521016..1521405 (-) 390 WP_159564007.1 cytidine deaminase -
  K5J94_RS07225 deoC 1521392..1522054 (-) 663 WP_159564008.1 deoxyribose-phosphate aldolase -
  K5J94_RS07230 - 1522581..1523180 (-) 600 WP_159564009.1 class I SAM-dependent methyltransferase -
  K5J94_RS07235 coaA 1523461..1524381 (+) 921 WP_159543971.1 type I pantothenate kinase -
  K5J94_RS07240 rpsT 1524435..1524683 (+) 249 WP_167547760.1 30S ribosomal protein S20 -
  K5J94_RS07245 ciaH 1525149..1526453 (-) 1305 WP_159543975.1 cell wall metabolism sensor histidine kinase WalK Regulator
  K5J94_RS07250 ciaR 1526446..1527120 (-) 675 WP_159543977.1 response regulator transcription factor Regulator
  K5J94_RS07255 - 1527369..1529903 (-) 2535 WP_221912756.1 M1 family metallopeptidase -
  K5J94_RS07260 phoU 1529970..1530623 (-) 654 WP_159543981.1 phosphate signaling complex protein PhoU -
  K5J94_RS07265 pstB 1530658..1531416 (-) 759 WP_159544128.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 49978.47 Da        Isoelectric Point: 9.4087

>NTDB_id=597074 K5J94_RS07245 WP_159543975.1 1525149..1526453(-) (ciaH) [Streptococcus halichoeri strain Shali_VAS-CPH]
MIKLKKFYQSDHFNHFFHFFAVFTGIFVVMTIIILQIMRFGVYSSVDSSLETVSKQSNLYASRTMERITSFYFYNDSALI
NPSEFKAKLANQPVTNTDIILFSSNGTVINAMDTFSNFHHFTLDKSQLNEIVTKNLENFYGRQEKFHTITVPVHSKNYPA
VAYMMAVANVQQLEIANERYEQIIIIVMVLFWTISVFASIYLANWSRKPILESYEKQKMFVENASHELRTPLAVLQNRLE
TLFRKPNESILANSEAIASSLEEVRNMRILTTNLLNLARRDDGIAPRYEPIDQAYFETIFNNYHLIAEEYGKTFSAKVEM
LHPFKGDKALLKQLVTILFDNAMKYTDKDGQVMISIRSSEKNLFIQVADNGPGIRDEDKEKIFDRFYRVDKARTRQKGGF
GLGLALAKQIVTALKGSIKVRDNQPQGTVFDVRV

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=597074 K5J94_RS07245 WP_159543975.1 1525149..1526453(-) (ciaH) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGATTAAATTAAAAAAGTTTTACCAATCAGACCACTTTAACCATTTTTTTCATTTTTTTGCTGTATTCACGGGTATTTT
TGTGGTTATGACGATTATTATCCTGCAAATCATGCGTTTTGGTGTCTATTCATCAGTAGATAGTAGCCTAGAGACCGTTT
CAAAGCAGTCCAATCTCTATGCCAGTCGTACCATGGAACGGATTACTTCCTTTTATTTTTATAATGATAGTGCCCTAATC
AATCCTAGTGAATTTAAGGCAAAATTAGCTAACCAACCCGTGACAAATACAGATATTATCCTTTTTAGTAGTAACGGGAC
GGTAATTAATGCTATGGATACTTTTTCTAATTTCCATCACTTTACCTTGGATAAAAGCCAACTCAATGAAATTGTAACGA
AAAATCTAGAAAATTTTTATGGGCGACAGGAAAAATTCCATACCATTACAGTTCCAGTCCATTCTAAAAATTATCCAGCT
GTGGCTTACATGATGGCAGTAGCCAATGTTCAGCAATTGGAAATTGCTAATGAACGTTATGAGCAAATCATTATTATTGT
GATGGTTCTCTTTTGGACTATTTCAGTGTTTGCTAGTATCTATCTGGCTAATTGGTCGCGCAAGCCAATCTTGGAAAGCT
ATGAAAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAATTACGGACACCACTTGCTGTCTTGCAAAACCGGCTTGAA
ACCTTATTTCGAAAGCCAAATGAAAGCATTCTTGCTAATAGTGAAGCCATTGCTTCTAGCCTTGAAGAAGTTCGCAATAT
GCGCATATTGACCACAAACTTATTAAATCTAGCACGGCGAGATGATGGGATTGCACCTCGCTATGAGCCAATTGACCAAG
CCTACTTTGAGACTATTTTTAATAATTACCACTTGATAGCAGAAGAATATGGCAAGACCTTCTCTGCTAAAGTGGAAATG
TTGCACCCTTTTAAAGGAGATAAGGCACTTTTGAAGCAGCTAGTGACTATTTTGTTTGACAATGCGATGAAATACACTGA
TAAAGACGGGCAGGTGATGATTAGCATACGCAGTAGTGAAAAAAATCTTTTTATCCAGGTAGCTGATAATGGTCCAGGCA
TTCGCGATGAGGATAAGGAAAAGATTTTTGATCGGTTTTATCGTGTTGATAAGGCAAGGACCCGGCAAAAAGGAGGCTTT
GGCCTTGGCTTGGCTCTAGCAAAACAGATTGTCACCGCCTTAAAAGGTAGCATTAAGGTTCGAGACAACCAGCCCCAAGG
CACGGTATTTGATGTAAGAGTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(218-283)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(326-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

55.53

100

0.555
  ciaH Streptococcus pneumoniae Rx1

48.961

99.77

0.488
  ciaH Streptococcus pneumoniae D39

48.961

99.77

0.488
  ciaH Streptococcus pneumoniae R6

48.961

99.77

0.488
  ciaH Streptococcus pneumoniae TIGR4

48.961

99.77

0.488