Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5F93_RS03490 Genome accession   NZ_CP081490
Coordinates   734313..734822 (+) Length   169 a.a.
NCBI ID   WP_011063767.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 729313..739822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5F93_RS03475 (K5F93_03475) bfr 729315..729779 (+) 465 WP_025129396.1 bacterioferritin -
  K5F93_RS03480 (K5F93_03480) uvrA 729897..732731 (-) 2835 WP_221810603.1 excinuclease ABC subunit UvrA -
  K5F93_RS03485 (K5F93_03485) - 732909..734303 (+) 1395 WP_102865263.1 MFS transporter -
  K5F93_RS03490 (K5F93_03490) ssb 734313..734822 (+) 510 WP_011063767.1 single-stranded DNA-binding protein Machinery gene
  K5F93_RS03495 (K5F93_03495) - 734918..735970 (-) 1053 WP_221810604.1 hypothetical protein -
  K5F93_RS03500 (K5F93_03500) - 735985..737811 (-) 1827 WP_221810605.1 hypothetical protein -
  K5F93_RS03505 (K5F93_03505) - 737815..739101 (-) 1287 WP_221810606.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18784.96 Da        Isoelectric Point: 5.9455

>NTDB_id=596952 K5F93_RS03490 WP_011063767.1 734313..734822(+) (ssb) [Pseudomonas protegens strain PS1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPAPQPQRESRPAPQQAAPQPAPDF
DSFDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=596952 K5F93_RS03490 WP_011063767.1 734313..734822(+) (ssb) [Pseudomonas protegens strain PS1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTATCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGCGCACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAGATTGCCGGTGAGTACCTGCGCAAGGGTTCCCAGGTCTACATCGAG
GGCAAACTGCAGACTCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATTGTCGACATGCAAGGCAC
CATGCAACTGCTGGGTGGCCGTCCACAGGGCGACCAGCAAGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCTCAGC
AGTCCCGTCCTGCTCCGCAGCCACAGCGTGAGTCGCGTCCGGCACCACAGCAGGCCGCTCCGCAGCCGGCACCGGATTTC
GACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.932

100

0.586
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.497
  ssb Neisseria meningitidis MC58

47.159

100

0.491