Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   K4120_RS12970 Genome accession   NZ_CP081488
Coordinates   2667045..2667797 (-) Length   250 a.a.
NCBI ID   WP_007408162.1    Uniprot ID   -
Organism   Bacillus velezensis strain LZN01     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2662045..2672797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4120_RS12945 (K4120_12945) mreC 2662481..2663344 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  K4120_RS12950 (K4120_12950) mreB 2663375..2664388 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  K4120_RS12955 (K4120_12955) radC 2664480..2665175 (-) 696 WP_032866595.1 DNA repair protein RadC -
  K4120_RS12960 (K4120_12960) - 2665207..2665776 (-) 570 WP_015417926.1 nucleoside triphosphate pyrophosphatase -
  K4120_RS12965 (K4120_12965) - 2665917..2666918 (-) 1002 WP_032866593.1 SPOR domain-containing protein -
  K4120_RS12970 (K4120_12970) comC 2667045..2667797 (-) 753 WP_007408162.1 A24 family peptidase Machinery gene
  K4120_RS12975 (K4120_12975) - 2667937..2669229 (-) 1293 WP_007408161.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  K4120_RS12980 (K4120_12980) - 2669288..2671930 (-) 2643 WP_032866591.1 valine--tRNA ligase -
  K4120_RS12985 (K4120_12985) - 2672383..2672574 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27187.88 Da        Isoelectric Point: 9.4293

>NTDB_id=596898 K4120_RS12970 WP_007408162.1 2667045..2667797(-) (comC) [Bacillus velezensis strain LZN01]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=596898 K4120_RS12970 WP_007408162.1 2667045..2667797(-) (comC) [Bacillus velezensis strain LZN01]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588