Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | K5E88_RS00250 | Genome accession | NZ_CP081486 |
| Coordinates | 40242..40706 (-) | Length | 154 a.a. |
| NCBI ID | WP_221812490.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain Pm3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 35037..56363 | 40242..40706 | within | 0 |
Gene organization within MGE regions
Location: 35037..56363
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5E88_RS00210 (K5E88_00210) | - | 35037..36074 (-) | 1038 | WP_016533424.1 | tyrosine-type recombinase/integrase | - |
| K5E88_RS11445 | - | 36083..36469 (-) | 387 | WP_016533425.1 | hypothetical protein | - |
| K5E88_RS11450 | - | 36585..37070 (-) | 486 | WP_016533426.1 | hypothetical protein | - |
| K5E88_RS00220 (K5E88_00220) | - | 37156..37455 (-) | 300 | WP_016533427.1 | hypothetical protein | - |
| K5E88_RS00225 (K5E88_00225) | - | 37465..37998 (-) | 534 | WP_016570062.1 | DUF551 domain-containing protein | - |
| K5E88_RS00230 (K5E88_00230) | - | 38133..38732 (-) | 600 | WP_014391447.1 | hypothetical protein | - |
| K5E88_RS00235 (K5E88_00235) | - | 38783..39571 (-) | 789 | WP_014391448.1 | DUF2303 family protein | - |
| K5E88_RS00240 (K5E88_00240) | - | 39643..39996 (-) | 354 | WP_016570064.1 | hypothetical protein | - |
| K5E88_RS00245 (K5E88_00245) | - | 40039..40230 (-) | 192 | WP_016533530.1 | hypothetical protein | - |
| K5E88_RS00250 (K5E88_00250) | ssb | 40242..40706 (-) | 465 | WP_221812490.1 | single-stranded DNA-binding protein | Machinery gene |
| K5E88_RS00255 (K5E88_00255) | - | 40710..41321 (-) | 612 | WP_139617321.1 | YqaJ viral recombinase family protein | - |
| K5E88_RS00260 (K5E88_00260) | bet | 41314..42099 (-) | 786 | WP_139617320.1 | phage recombination protein Bet | - |
| K5E88_RS00265 (K5E88_00265) | - | 42109..43008 (-) | 900 | WP_221812491.1 | hypothetical protein | - |
| K5E88_RS00270 (K5E88_00270) | - | 43011..43172 (-) | 162 | WP_199764787.1 | hypothetical protein | - |
| K5E88_RS00275 (K5E88_00275) | - | 43185..43421 (-) | 237 | WP_078801815.1 | hypothetical protein | - |
| K5E88_RS00280 (K5E88_00280) | - | 43393..43692 (-) | 300 | WP_014391453.1 | hypothetical protein | - |
| K5E88_RS00285 (K5E88_00285) | - | 43840..44070 (+) | 231 | WP_223251317.1 | hypothetical protein | - |
| K5E88_RS00290 (K5E88_00290) | - | 44132..44818 (-) | 687 | WP_221812492.1 | Bro-N domain-containing protein | - |
| K5E88_RS00295 (K5E88_00295) | - | 45171..45698 (+) | 528 | WP_075272491.1 | hypothetical protein | - |
| K5E88_RS00300 (K5E88_00300) | - | 45789..46052 (-) | 264 | WP_071522857.1 | hypothetical protein | - |
| K5E88_RS00305 (K5E88_00305) | - | 46277..46507 (-) | 231 | WP_016533507.1 | hypothetical protein | - |
| K5E88_RS00310 (K5E88_00310) | - | 47085..47399 (+) | 315 | WP_071523842.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| K5E88_RS00315 (K5E88_00315) | - | 47396..47686 (+) | 291 | WP_102822911.1 | addiction module antidote protein | - |
| K5E88_RS00320 (K5E88_00320) | - | 47712..48149 (-) | 438 | WP_078819883.1 | hypothetical protein | - |
| K5E88_RS00325 (K5E88_00325) | - | 48523..49200 (-) | 678 | WP_016569989.1 | XRE family transcriptional regulator | - |
| K5E88_RS00330 (K5E88_00330) | - | 49324..49521 (+) | 198 | WP_014390719.1 | helix-turn-helix domain-containing protein | - |
| K5E88_RS00335 (K5E88_00335) | - | 49570..50022 (+) | 453 | WP_102822910.1 | phage regulatory CII family protein | - |
| K5E88_RS11455 | - | 50090..50224 (+) | 135 | WP_016569987.1 | hypothetical protein | - |
| K5E88_RS00340 (K5E88_00340) | - | 50276..50456 (+) | 181 | Protein_64 | hypothetical protein | - |
| K5E88_RS00345 (K5E88_00345) | - | 50533..50886 (+) | 354 | WP_014390722.1 | HNH endonuclease | - |
| K5E88_RS00350 (K5E88_00350) | - | 50888..51790 (+) | 903 | WP_016533442.1 | hypothetical protein | - |
| K5E88_RS00355 (K5E88_00355) | - | 51790..52479 (+) | 690 | WP_064964930.1 | replication protein P | - |
| K5E88_RS00360 (K5E88_00360) | - | 52483..53019 (+) | 537 | WP_197418035.1 | phage N-6-adenine-methyltransferase | - |
| K5E88_RS00365 (K5E88_00365) | - | 53009..53467 (+) | 459 | WP_156734824.1 | recombination protein NinB | - |
| K5E88_RS00370 (K5E88_00370) | - | 53541..53756 (+) | 216 | WP_170353051.1 | hypothetical protein | - |
| K5E88_RS00375 (K5E88_00375) | - | 53749..53886 (+) | 138 | WP_221812493.1 | hypothetical protein | - |
| K5E88_RS00380 (K5E88_00380) | - | 53879..54481 (+) | 603 | WP_221812494.1 | recombination protein NinG | - |
| K5E88_RS00385 (K5E88_00385) | - | 54481..54846 (+) | 366 | WP_139616933.1 | antiterminator Q family protein | - |
| K5E88_RS00390 (K5E88_00390) | - | 54921..55160 (+) | 240 | WP_078819661.1 | hypothetical protein | - |
| K5E88_RS00395 (K5E88_00395) | - | 55280..55540 (+) | 261 | WP_014391475.1 | HP1 family phage holin | - |
| K5E88_RS00400 (K5E88_00400) | - | 55537..56067 (+) | 531 | WP_014667794.1 | lysozyme | - |
| K5E88_RS00405 (K5E88_00405) | - | 56040..56363 (+) | 324 | WP_221812495.1 | DUF2570 family protein | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 17246.08 Da Isoelectric Point: 6.9825
>NTDB_id=596800 K5E88_RS00250 WP_221812490.1 40242..40706(-) (ssb) [Pasteurella multocida strain Pm3]
MAGVNRVIILGNLGNDPEIRTMPNGDPVAKISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQANAQAPQNNAYANAKAGKPVQQADSFEDDSIPF
MAGVNRVIILGNLGNDPEIRTMPNGDPVAKISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQANAQAPQNNAYANAKAGKPVQQADSFEDDSIPF
Nucleotide
Download Length: 465 bp
>NTDB_id=596800 K5E88_RS00250 WP_221812490.1 40242..40706(-) (ssb) [Pasteurella multocida strain Pm3]
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAATGATCCTGAAATTCGCACAATGCCAAATGGCGACCC
TGTTGCAAAAATCAGCGTCGCAACCAGTGAAAGCTGGATCGACAAAAATACTGGCGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACTGAAATCCAAGGCGACGTATTGCAGAT
GTTAGACAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTAACGCACAAGCACCGCAAAACAATGCTTATGCCA
ATGCGAAAGCTGGAAAGCCAGTGCAACAGGCTGATAGTTTTGAAGATGATAGCATACCTTTTTAA
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAATGATCCTGAAATTCGCACAATGCCAAATGGCGACCC
TGTTGCAAAAATCAGCGTCGCAACCAGTGAAAGCTGGATCGACAAAAATACTGGCGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACTGAAATCCAAGGCGACGTATTGCAGAT
GTTAGACAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTAACGCACAAGCACCGCAAAACAATGCTTATGCCA
ATGCGAAAGCTGGAAAGCCAGTGCAACAGGCTGATAGTTTTGAAGATGATAGCATACCTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
61.326 |
100 |
0.721 |
| ssb | Vibrio cholerae strain A1552 |
47.701 |
100 |
0.539 |
| ssb | Neisseria meningitidis MC58 |
42.197 |
100 |
0.474 |
| ssb | Neisseria gonorrhoeae MS11 |
42.197 |
100 |
0.474 |