Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5E88_RS00250 Genome accession   NZ_CP081486
Coordinates   40242..40706 (-) Length   154 a.a.
NCBI ID   WP_221812490.1    Uniprot ID   -
Organism   Pasteurella multocida strain Pm3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 35242..45706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5E88_RS11445 - 36083..36469 (-) 387 WP_016533425.1 hypothetical protein -
  K5E88_RS11450 - 36585..37070 (-) 486 WP_016533426.1 hypothetical protein -
  K5E88_RS00220 (K5E88_00220) - 37156..37455 (-) 300 WP_016533427.1 hypothetical protein -
  K5E88_RS00225 (K5E88_00225) - 37465..37998 (-) 534 WP_016570062.1 DUF551 domain-containing protein -
  K5E88_RS00230 (K5E88_00230) - 38133..38732 (-) 600 WP_014391447.1 hypothetical protein -
  K5E88_RS00235 (K5E88_00235) - 38783..39571 (-) 789 WP_014391448.1 DUF2303 family protein -
  K5E88_RS00240 (K5E88_00240) - 39643..39996 (-) 354 WP_016570064.1 hypothetical protein -
  K5E88_RS00245 (K5E88_00245) - 40039..40230 (-) 192 WP_016533530.1 hypothetical protein -
  K5E88_RS00250 (K5E88_00250) ssb 40242..40706 (-) 465 WP_221812490.1 single-stranded DNA-binding protein Machinery gene
  K5E88_RS00255 (K5E88_00255) - 40710..41321 (-) 612 WP_139617321.1 YqaJ viral recombinase family protein -
  K5E88_RS00260 (K5E88_00260) bet 41314..42099 (-) 786 WP_139617320.1 phage recombination protein Bet -
  K5E88_RS00265 (K5E88_00265) - 42109..43008 (-) 900 WP_221812491.1 hypothetical protein -
  K5E88_RS00270 (K5E88_00270) - 43011..43172 (-) 162 WP_199764787.1 hypothetical protein -
  K5E88_RS00275 (K5E88_00275) - 43185..43421 (-) 237 WP_078801815.1 hypothetical protein -
  K5E88_RS00280 (K5E88_00280) - 43393..43692 (-) 300 WP_014391453.1 hypothetical protein -
  K5E88_RS00285 (K5E88_00285) - 43840..44070 (+) 231 WP_223251317.1 hypothetical protein -
  K5E88_RS00290 (K5E88_00290) - 44132..44818 (-) 687 WP_221812492.1 Bro-N domain-containing protein -
  K5E88_RS00295 (K5E88_00295) - 45171..45698 (+) 528 WP_075272491.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17246.08 Da        Isoelectric Point: 6.9825

>NTDB_id=596800 K5E88_RS00250 WP_221812490.1 40242..40706(-) (ssb) [Pasteurella multocida strain Pm3]
MAGVNRVIILGNLGNDPEIRTMPNGDPVAKISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQANAQAPQNNAYANAKAGKPVQQADSFEDDSIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=596800 K5E88_RS00250 WP_221812490.1 40242..40706(-) (ssb) [Pasteurella multocida strain Pm3]
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAATGATCCTGAAATTCGCACAATGCCAAATGGCGACCC
TGTTGCAAAAATCAGCGTCGCAACCAGTGAAAGCTGGATCGACAAAAATACTGGCGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACTGAAATCCAAGGCGACGTATTGCAGAT
GTTAGACAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTAACGCACAAGCACCGCAAAACAATGCTTATGCCA
ATGCGAAAGCTGGAAAGCCAGTGCAACAGGCTGATAGTTTTGAAGATGATAGCATACCTTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

61.326

100

0.721
  ssb Vibrio cholerae strain A1552

47.701

100

0.539
  ssb Neisseria meningitidis MC58

42.197

100

0.474
  ssb Neisseria gonorrhoeae MS11

42.197

100

0.474