Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   K5K96_RS05840 Genome accession   NZ_CP081472
Coordinates   1097159..1098916 (-) Length   585 a.a.
NCBI ID   WP_227276639.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 12B2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092159..1103916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K96_RS05820 (K5K96_05780) - 1092220..1093200 (+) 981 WP_227276637.1 aldo/keto reductase -
  K5K96_RS05825 (K5K96_05785) - 1093370..1093828 (+) 459 WP_114290097.1 MarR family winged helix-turn-helix transcriptional regulator -
  K5K96_RS05830 (K5K96_05790) - 1093806..1095206 (+) 1401 WP_114290098.1 DHA2 family efflux MFS transporter permease subunit -
  K5K96_RS05835 (K5K96_05795) rcrQ 1095384..1097159 (-) 1776 WP_227276638.1 ABC transporter ATP-binding protein Regulator
  K5K96_RS05840 (K5K96_05800) rcrP 1097159..1098916 (-) 1758 WP_227276639.1 ABC transporter ATP-binding protein Regulator
  K5K96_RS05845 - 1099017..1099097 (+) 81 Protein_1107 DUF3788 domain-containing protein -
  K5K96_RS05850 (K5K96_05805) - 1099151..1100191 (-) 1041 WP_114290101.1 HAMP domain-containing sensor histidine kinase -
  K5K96_RS05855 (K5K96_05810) - 1100188..1100862 (-) 675 WP_227276640.1 response regulator transcription factor -
  K5K96_RS05860 (K5K96_05815) - 1101289..1102410 (+) 1122 WP_167806656.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  K5K96_RS05865 (K5K96_05820) - 1102432..1103172 (+) 741 WP_227276641.1 cyclase family protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64557.06 Da        Isoelectric Point: 7.3929

>NTDB_id=596704 K5K96_RS05840 WP_227276639.1 1097159..1098916(-) (rcrP) [Vagococcus fluvialis strain 12B2]
MVKIFRYLSKTEYALAGVSLLFIIAQVWLDLKLPDYMNEITKLVQTEGSEMSEILSAGGMMLLCAVASLLSAVIVAVIVA
KITANYSARLREKLFGKVQSLSTEEINHFSIPSLITRTTNDITQVQMLIVMGLQAMVKAPILAVWAILKISNKSWQWTFA
TGVAIVVLLVFVITCMILALPKMKKIQGYTDKLNSVTRENLTGLQVVRAYNAEDYQEKKFDDANETLMRTNVFTNRTFAF
LMPGIQLVMSGLTLSIYWLGASLINSAALENKLNLFSDMVVFSSYAMQVIMAFMMLVMIFIMIPRASVSAKRILEILDSK
SALVDGKLTGENSAVKGKIEFKHVNFKYPQADGMALNDINFTVTQGETLAIIGATGSGKTTLVNLIARLYDTTSGEILVD
DINVKDYSHAHLNNKLGFVTQKATLFSGTIASNVAFGDNGNPNKLDSDIVDSIYTAQAAEFVEKMPLGYDHAVAQNGGNL
SGGQKQRLSIARAINRRSEILIFDDSFSALDYKTDRNLRESLKKDCKDTTKIIVAQRIGTIRNADTILVLDEGQLVGKGT
HNELMENNPVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=596704 K5K96_RS05840 WP_227276639.1 1097159..1098916(-) (rcrP) [Vagococcus fluvialis strain 12B2]
ATGGTTAAAATATTTAGATATTTAAGTAAAACGGAATACGCCCTTGCTGGAGTTAGTTTACTTTTTATCATAGCTCAGGT
TTGGTTAGATTTAAAACTGCCTGACTATATGAATGAAATCACTAAACTTGTTCAAACTGAAGGAAGTGAAATGAGTGAAA
TCCTCTCCGCTGGTGGGATGATGTTACTCTGTGCTGTTGCTAGTTTGTTGAGTGCTGTCATTGTAGCTGTGATTGTCGCA
AAAATTACTGCTAATTACAGTGCTAGATTACGTGAAAAATTATTTGGAAAAGTACAATCATTATCAACTGAGGAAATTAA
TCATTTCTCTATTCCAAGTTTAATTACCCGTACAACAAATGATATTACTCAAGTTCAAATGCTAATTGTAATGGGACTTC
AAGCAATGGTTAAAGCTCCTATTTTAGCAGTCTGGGCAATTCTGAAGATTTCTAACAAAAGTTGGCAATGGACATTTGCC
ACTGGTGTTGCTATTGTCGTTCTTTTAGTTTTTGTGATTACGTGTATGATTTTAGCACTGCCAAAAATGAAAAAAATTCA
AGGATACACTGATAAACTTAATTCAGTAACTCGTGAAAATTTAACTGGTTTACAAGTAGTTAGGGCATATAATGCTGAGG
ATTATCAAGAGAAAAAATTTGATGATGCCAATGAAACCTTAATGAGAACAAACGTCTTCACCAATCGAACTTTCGCCTTT
TTAATGCCTGGTATTCAATTAGTCATGAGTGGTTTAACTCTTTCTATTTACTGGCTAGGTGCGTCATTAATCAATAGTGC
AGCACTTGAAAATAAATTAAATCTATTTTCTGATATGGTTGTTTTCTCTTCATATGCCATGCAAGTTATTATGGCCTTTA
TGATGTTAGTTATGATTTTTATTATGATTCCAAGAGCTAGCGTTTCTGCTAAGCGTATTTTAGAAATTCTAGACTCTAAA
TCAGCTCTTGTTGATGGAAAATTAACAGGAGAAAATTCAGCGGTTAAAGGTAAAATTGAATTTAAACATGTTAACTTCAA
ATACCCACAAGCTGATGGTATGGCTCTTAATGACATTAACTTTACTGTGACCCAAGGTGAAACTTTAGCAATTATTGGTG
CAACTGGTAGCGGAAAAACAACTTTAGTCAATTTAATTGCAAGGCTTTATGACACAACAAGTGGTGAGATTTTAGTTGAT
GACATTAATGTTAAAGATTACTCTCATGCTCATTTAAACAACAAGCTTGGTTTTGTGACTCAAAAAGCGACTCTCTTTAG
TGGAACAATTGCTAGTAACGTGGCTTTTGGAGATAATGGTAATCCAAATAAATTAGATTCAGATATTGTTGATTCTATAT
ACACTGCTCAAGCAGCTGAATTTGTTGAAAAAATGCCTTTAGGCTATGATCATGCTGTTGCTCAAAATGGTGGAAACTTA
TCTGGAGGACAAAAACAACGTTTATCTATAGCTAGAGCCATTAATCGTCGCTCAGAAATTTTAATTTTTGATGATTCGTT
CTCAGCACTTGATTACAAAACAGATCGTAATTTAAGAGAAAGTCTTAAAAAAGATTGTAAAGACACAACTAAAATTATCG
TTGCTCAGCGTATTGGAACCATTAGAAATGCCGATACTATTTTAGTTCTTGATGAAGGTCAATTAGTTGGCAAAGGTACT
CATAATGAGTTAATGGAAAACAACCCTGTTTATCAAGAAATTGCCTACTCACAACTTTCTAAGGAGGAATTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.342

100

0.523