Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5K96_RS02745 Genome accession   NZ_CP081472
Coordinates   488731..489255 (+) Length   174 a.a.
NCBI ID   WP_207027556.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 12B2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 483731..494255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K96_RS02735 (K5K96_02715) gyrA 485537..488023 (+) 2487 WP_114290346.1 DNA gyrase subunit A -
  K5K96_RS02740 (K5K96_02720) rpsF 488383..488685 (+) 303 WP_086340746.1 30S ribosomal protein S6 -
  K5K96_RS02745 (K5K96_02725) ssb 488731..489255 (+) 525 WP_207027556.1 single-stranded DNA-binding protein Machinery gene
  K5K96_RS02750 (K5K96_02730) rpsR 489277..489519 (+) 243 WP_086340744.1 30S ribosomal protein S18 -
  K5K96_RS02755 (K5K96_02735) rplI 489665..490117 (+) 453 WP_114290344.1 50S ribosomal protein L9 -
  K5K96_RS02760 (K5K96_02740) dnaB 490141..491502 (+) 1362 WP_086340742.1 replicative DNA helicase -
  K5K96_RS02765 (K5K96_02745) - 491622..492914 (+) 1293 WP_207027558.1 adenylosuccinate synthase -
  K5K96_RS02770 (K5K96_02750) - 492995..493867 (+) 873 WP_114290342.1 DegV family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19422.25 Da        Isoelectric Point: 4.7621

>NTDB_id=596695 K5K96_RS02745 WP_207027556.1 488731..489255(+) (ssb) [Vagococcus fluvialis strain 12B2]
MINNVVLVGRLTRDPELRFTSNGSAVATFNLAVNRNFTNQSGEREADFVNCVIWRKPAETLANYAKKGTLLGVVGRIQTR
NYENQQGQKVYVTEVVCDNFQLLESRNVSEQRQQSGGFGQSDMGNNFNSFSQNQNNQSFGGQSSSKKEMPNFDRDSDPFG
SSSQIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=596695 K5K96_RS02745 WP_207027556.1 488731..489255(+) (ssb) [Vagococcus fluvialis strain 12B2]
ATGATTAACAACGTTGTGCTAGTAGGAAGACTTACTCGAGATCCAGAGCTTAGATTTACTTCTAACGGATCAGCTGTAGC
AACTTTTAACTTGGCTGTAAATCGTAACTTCACTAACCAAAGTGGGGAGAGAGAAGCTGATTTTGTTAATTGTGTAATCT
GGAGAAAACCTGCTGAAACATTAGCTAATTATGCCAAAAAAGGTACATTACTAGGTGTTGTAGGCCGTATTCAAACACGT
AATTATGAAAATCAACAAGGTCAAAAAGTATATGTGACAGAAGTAGTATGTGATAATTTCCAATTATTAGAATCACGTAA
CGTGTCTGAACAAAGACAACAATCAGGTGGCTTTGGACAGTCAGATATGGGAAATAATTTCAATAGTTTTTCTCAAAACC
AAAACAATCAATCATTTGGCGGCCAATCTTCAAGTAAAAAAGAAATGCCGAATTTCGATCGTGATAGCGATCCTTTTGGA
AGCTCATCACAAATTGATATCTCGGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.795

100

0.615
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.571

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

60.92

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.22

70.69

0.362