Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5K97_RS06150 Genome accession   NZ_CP081470
Coordinates   1234619..1235143 (-) Length   174 a.a.
NCBI ID   WP_167808236.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 25B2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1229619..1240143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K97_RS06125 (K5K97_06130) - 1230007..1230879 (-) 873 WP_167800556.1 DegV family protein -
  K5K97_RS06130 (K5K97_06135) - 1230960..1232252 (-) 1293 WP_114290343.1 adenylosuccinate synthase -
  K5K97_RS06135 (K5K97_06140) dnaB 1232372..1233733 (-) 1362 WP_086340742.1 replicative DNA helicase -
  K5K97_RS06140 (K5K97_06145) rplI 1233757..1234209 (-) 453 WP_114290344.1 50S ribosomal protein L9 -
  K5K97_RS06145 (K5K97_06150) rpsR 1234355..1234597 (-) 243 WP_086340744.1 30S ribosomal protein S18 -
  K5K97_RS06150 (K5K97_06155) ssb 1234619..1235143 (-) 525 WP_167808236.1 single-stranded DNA-binding protein Machinery gene
  K5K97_RS06155 (K5K97_06160) rpsF 1235189..1235491 (-) 303 WP_086340746.1 30S ribosomal protein S6 -
  K5K97_RS06160 (K5K97_06165) gyrA 1235851..1238337 (-) 2487 WP_207011004.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19408.18 Da        Isoelectric Point: 4.6109

>NTDB_id=596664 K5K97_RS06150 WP_167808236.1 1234619..1235143(-) (ssb) [Vagococcus fluvialis strain 25B2]
MINNVVLVGRLTRDPELRFTSNGSAVATFNLAVNRNFTNQSGEREADFVNCVIWRKPAETLANYAKKGTLLGVVGRIQTR
NYENQQGQKVYVTEVVCDNFQLLESRNVSEQRQQSGGFGQSDMGNNFNSFSQNQNNQSFGGQSSSKNEMPNFDRDSDPFG
SSSQIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=596664 K5K97_RS06150 WP_167808236.1 1234619..1235143(-) (ssb) [Vagococcus fluvialis strain 25B2]
ATGATTAATAACGTTGTGCTAGTAGGAAGACTTACTCGAGATCCAGAGCTTAGATTTACTTCTAACGGATCAGCTGTAGC
AACTTTTAACTTGGCTGTAAATCGTAACTTCACTAACCAAAGTGGGGAGAGAGAAGCTGATTTTGTTAATTGTGTAATCT
GGAGAAAACCTGCTGAAACATTAGCTAATTATGCCAAAAAAGGTACATTACTAGGTGTTGTAGGCCGTATTCAAACACGT
AATTATGAAAATCAACAAGGTCAAAAAGTATATGTGACAGAAGTAGTATGTGATAATTTCCAATTATTAGAATCACGTAA
TGTGTCTGAACAAAGACAACAATCAGGTGGCTTTGGACAGTCAGATATGGGAAATAACTTCAATAGTTTTTCTCAAAACC
AAAACAATCAATCATTTGGCGGCCAATCTTCAAGTAAAAATGAAATGCCGAATTTCGATCGTGATAGCGATCCTTTTGGA
AGCTCATCACAAATTGATATCTCGGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.364

100

0.621
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.333

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

60.92

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.22

70.69

0.362