Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   M9H69_RS10265 Genome accession   NZ_CP097843
Coordinates   2045936..2047033 (+) Length   365 a.a.
NCBI ID   WP_250315572.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2040936..2052033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS10240 (M9H69_10240) pgsA 2041461..2042006 (-) 546 WP_250315567.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M9H69_RS10245 (M9H69_10245) rodZ 2042017..2042838 (-) 822 WP_250315568.1 cytoskeleton protein RodZ -
  M9H69_RS10250 (M9H69_10250) - 2042874..2044157 (-) 1284 WP_250315569.1 pitrilysin family protein -
  M9H69_RS10255 (M9H69_10255) - 2044154..2045404 (-) 1251 WP_250315570.1 pitrilysin family protein -
  M9H69_RS10260 (M9H69_10260) yaaA 2045565..2045933 (+) 369 WP_250315571.1 S4 domain-containing protein YaaA -
  M9H69_RS10265 (M9H69_10265) recF 2045936..2047033 (+) 1098 WP_250315572.1 DNA replication/repair protein RecF Machinery gene
  M9H69_RS10270 (M9H69_10270) guaB 2047087..2048565 (-) 1479 WP_250315573.1 IMP dehydrogenase -
  M9H69_RS10275 (M9H69_10275) trpS 2048727..2049752 (-) 1026 WP_000165468.1 tryptophan--tRNA ligase -
  M9H69_RS10280 (M9H69_10280) - 2049948..2051570 (+) 1623 WP_250315574.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41991.22 Da        Isoelectric Point: 9.3016

>NTDB_id=596664 M9H69_RS10265 WP_250315572.1 2045936..2047033(+) (recF) [Streptococcus oralis strain HP01]
MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIHFDNEQLRLSGLLQKKTSS
IPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQR
NTYLKSSQKIDETFLSVLDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNQSEELSISYQSTVNFTNEEVLMDSFKM
ALEKSRSRDLFKKNTGVGPHRDDIAFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITNESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFNIQNGKISVNQP

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=596664 M9H69_RS10265 WP_250315572.1 2045936..2047033(+) (recF) [Streptococcus oralis strain HP01]
ATGTGGCTCCAACATTTAACAATTAAAACTTTTCGAAACTACAAAGAGGCAAAAATTGATTTTAATCCAAAATTAAACGT
CTTTCTAGGTCAAAATGCACAAGGAAAAACTAATATTCTAGAAGCAATCTATTTCTTGGCCTTGACACGTAGTCATCGGA
CTCGTACAGATAAAAATCTCATTCATTTTGATAACGAGCAACTCCGTCTTTCTGGCTTGCTACAGAAAAAAACAAGCTCT
ATTCCTCTAGAAATTGATTTAACGCCAAAAGGGCGTGTGACTAAAGTCAATCACTTAAAGCAAGCTCGCCTATCAGACTA
CATCGGACATATGAATGTTGTCCTCTTCGCACCTGAAGATCTCCAGTTAATTAAAGGAGCACCTTCTGTCCGTCGAAAGT
TTATTGACATCGAACTGGGACAAATTAAACCAATCTACTTGTCAGACTTGTCAAACTATAACCATATACTCAAGCAAAGA
AATACTTACCTAAAATCCAGCCAGAAGATTGATGAAACATTTCTGTCAGTATTAGATGATCAGTTAGTAGAGTATGGATG
TCGCGTTATAAAGCATCGAATAAAATTTATTAAAGACTTAGAGAAATTTGGTCAAAAAAAACACTTAGAAATTTCAAATC
AATCAGAAGAGTTGTCAATATCTTATCAATCAACTGTCAACTTCACTAATGAAGAAGTCTTAATGGATTCTTTTAAAATG
GCTTTAGAGAAAAGTAGATCAAGAGATTTATTCAAAAAGAATACTGGTGTTGGCCCTCATCGAGATGACATTGCTTTCTA
TATTAATGGTATGGATGCTAGTTTTGGAAGTCAAGGGCAACATCGTAGTCTTGTGCTTTCTATCAAACTAGCAGAGATTG
AACTAATGGAAAGCATTACTAACGAGTCTCCAATACTCTTGCTTGACGATGTTATGAGCGAACTTGACAACACACGACAA
CTAAAATTACTAGAAACCATTTCTCAATCTATCCAAACCTTTATTACAACAACAAGTTTAGACCACTTACAAAATTTGCC
AGAAAACCTTAGTATTTTCAATATTCAAAACGGTAAAATTTCTGTAAATCAACCTTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

88.705

99.452

0.882
  recF Bacillus subtilis subsp. subtilis str. 168

45.652

100

0.46