Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5K99_RS02555 Genome accession   NZ_CP081461
Coordinates   460125..460649 (+) Length   174 a.a.
NCBI ID   WP_114290345.1    Uniprot ID   A0A369AQD4
Organism   Vagococcus fluvialis strain 36B2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 455125..465649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K99_RS02545 (K5K99_02535) gyrA 456931..459417 (+) 2487 WP_114290346.1 DNA gyrase subunit A -
  K5K99_RS02550 (K5K99_02540) rpsF 459777..460079 (+) 303 WP_086340746.1 30S ribosomal protein S6 -
  K5K99_RS02555 (K5K99_02545) ssb 460125..460649 (+) 525 WP_114290345.1 single-stranded DNA-binding protein Machinery gene
  K5K99_RS02560 (K5K99_02550) rpsR 460671..460913 (+) 243 WP_086340744.1 30S ribosomal protein S18 -
  K5K99_RS02565 (K5K99_02555) rplI 461059..461511 (+) 453 WP_114290344.1 50S ribosomal protein L9 -
  K5K99_RS02570 (K5K99_02560) dnaB 461535..462896 (+) 1362 WP_086340742.1 replicative DNA helicase -
  K5K99_RS02575 (K5K99_02565) - 463016..464308 (+) 1293 WP_114290343.1 adenylosuccinate synthase -
  K5K99_RS02580 (K5K99_02570) - 464389..465261 (+) 873 WP_227259080.1 DegV family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19376.12 Da        Isoelectric Point: 4.6109

>NTDB_id=596584 K5K99_RS02555 WP_114290345.1 460125..460649(+) (ssb) [Vagococcus fluvialis strain 36B2]
MINNVVLVGRLTRDPELRFTSNGSAVATFNLAVNRNFTNQSGEREADFVNCVIWRKPAETLANYAKKGTLLGVVGRIQTR
NYENQQGQKVYVTEVVCDNFQLLESRNVSEQRQQSGGFGQSDVGNNFNSFSQNQNNQSFGGQSSSKNEMPNFDRDSDPFG
SSSQIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=596584 K5K99_RS02555 WP_114290345.1 460125..460649(+) (ssb) [Vagococcus fluvialis strain 36B2]
ATGATTAATAACGTTGTGCTAGTAGGAAGACTTACTCGAGATCCAGAGCTTAGATTTACTTCTAACGGATCAGCTGTAGC
AACTTTTAACTTGGCTGTAAATCGTAACTTCACTAACCAAAGTGGGGAGAGAGAAGCTGATTTTGTTAATTGTGTAATCT
GGAGAAAACCTGCTGAAACATTAGCTAATTATGCCAAAAAAGGTACATTACTAGGTGTTGTAGGCCGTATTCAAACACGT
AATTATGAAAATCAACAAGGTCAAAAAGTATATGTGACAGAAGTAGTATGTGATAATTTCCAATTATTAGAATCACGTAA
TGTGTCTGAACAAAGACAACAATCAGGTGGCTTTGGACAGTCAGATGTGGGAAATAACTTCAATAGTTTTTCTCAAAACC
AAAACAATCAATCATTTGGCGGCCAATCTTCAAGTAAAAATGAAATGCCGAATTTCGATCGTGATAGCGATCCTTTTGGA
AGCTCATCACAAATTGATATCTCGGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A369AQD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.364

100

0.621
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.333

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

60.92

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.22

70.69

0.362