Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   M9H69_RS00105 Genome accession   NZ_CP097843
Coordinates   21053..21289 (+) Length   78 a.a.
NCBI ID   WP_000939506.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 16053..26289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS00100 (M9H69_00100) - 19915..20850 (+) 936 WP_009729550.1 IS30 family transposase -
  M9H69_RS00105 (M9H69_00105) comW 21053..21289 (+) 237 WP_000939506.1 sigma(X)-activator ComW Regulator
  M9H69_RS00110 (M9H69_00110) - 21532..22818 (+) 1287 WP_195217196.1 adenylosuccinate synthase -
  M9H69_RS00115 (M9H69_00115) tadA 23019..23486 (+) 468 WP_250315586.1 tRNA adenosine(34) deaminase TadA -
  M9H69_RS00125 (M9H69_00125) - 23695..24831 (-) 1137 WP_250315587.1 site-specific integrase -
  M9H69_RS00130 (M9H69_00130) - 24956..25627 (-) 672 WP_250315588.1 zinc ribbon domain-containing protein -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9482.07 Da        Isoelectric Point: 9.3040

>NTDB_id=596553 M9H69_RS00105 WP_000939506.1 21053..21289(+) (comW) [Streptococcus oralis strain HP01]
MLQKFYDRAFVFLKLVEQEYASLGQSCAEWESLHLRFLLYYLIRFKIKSDRDFSLYHFKTAYRLYLDKLLQGGTTLIQ

Nucleotide


Download         Length: 237 bp        

>NTDB_id=596553 M9H69_RS00105 WP_000939506.1 21053..21289(+) (comW) [Streptococcus oralis strain HP01]
ATGCTTCAGAAATTTTATGATCGAGCATTTGTTTTTTTGAAACTAGTTGAACAAGAATATGCCTCTTTAGGCCAGAGTTG
TGCTGAGTGGGAATCACTTCATCTTCGGTTTTTACTATATTATTTAATCCGATTTAAAATAAAAAGTGATAGGGACTTTT
CACTATATCACTTTAAAACAGCTTATCGCTTATATCTAGATAAATTACTGCAAGGTGGTACAACTCTTATCCAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis NCTC 12261

47.143

89.744

0.423
  comW Streptococcus mitis SK321

47.143

89.744

0.423
  comW Streptococcus pneumoniae Rx1

44.286

89.744

0.397
  comW Streptococcus pneumoniae D39

44.286

89.744

0.397
  comW Streptococcus pneumoniae R6

44.286

89.744

0.397
  comW Streptococcus pneumoniae TIGR4

44.286

89.744

0.397