Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   AW27_RS25770 Genome accession   NZ_CP097800
Coordinates   5793985..5796150 (+) Length   721 a.a.
NCBI ID   WP_037927490.1    Uniprot ID   -
Organism   Streptomyces sp. PCS3-D2 isolate P1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5788985..5801150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW27_RS25745 (AW27_025705) - 5788992..5789936 (-) 945 WP_052031189.1 pseudouridine-5'-phosphate glycosidase -
  AW27_RS25750 (AW27_025710) - 5790398..5790772 (+) 375 WP_037927497.1 cupin domain-containing protein -
  AW27_RS25755 (AW27_025715) - 5790762..5792057 (-) 1296 WP_037927493.1 MFS transporter -
  AW27_RS25760 (AW27_025720) - 5792223..5792786 (-) 564 WP_037926633.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AW27_RS25765 (AW27_025725) - 5792842..5793741 (-) 900 WP_037926630.1 glycerophosphodiester phosphodiesterase family protein -
  AW27_RS25770 (AW27_025730) uvrB 5793985..5796150 (+) 2166 WP_037927490.1 excinuclease ABC subunit UvrB Machinery gene
  AW27_RS25775 (AW27_025735) - 5796239..5796817 (+) 579 WP_037926627.1 TerD family protein -
  AW27_RS25780 (AW27_025740) - 5796873..5798834 (+) 1962 WP_037926624.1 TerD family protein -
  AW27_RS25785 (AW27_025745) - 5799074..5800054 (+) 981 WP_037926621.1 TerC family protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 80744.79 Da        Isoelectric Point: 4.8389

>NTDB_id=596541 AW27_RS25770 WP_037927490.1 5793985..5796150(+) (uvrB) [Streptomyces sp. PCS3-D2 isolate P1]
MRPVSKIERTVAPFEVVSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNALLTRRDVIVVASVSCIYGLGTP
QEYVDRMVSLTVGEEIDRDQLLRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDRELYVFPASHYVAGPERMEKAIAGIEAELAERLGELEKQGKMLEAQRLRMRTTYDLEMMRQIGSCSGIENYSLH
MDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGTYELSRGDGFVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRKRVEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPGMEKAIEETNRRREKQIAYNTANGIDPQPLRKKINDIVATIAREELDTEQLLGTGYRQGKEGRGAKAPVPDLGG
LATHAPAGAKGAKSAKPAKGAKAAEVLTDRPAAELASLIEQMTERMRAAAAELQFEVAARIRDEVGELKKELRQMKEAGL
A

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=596541 AW27_RS25770 WP_037927490.1 5793985..5796150(+) (uvrB) [Streptomyces sp. PCS3-D2 isolate P1]
ATGCGGCCCGTATCGAAGATCGAACGCACGGTGGCGCCTTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGAGAAGCGCATCCGTGCAGGTGAGAAGGATGTCGTCCTGCTGGGTGCGACCGGCACCGGCA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTCATGGCGCCGAACAAGACGCTGGCCGCC
CAGTTGGCGAACGAGTTCCGCGAGCTGCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTACCGCAGTCGGACACGTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGGCTGCGCCACT
CCGCCACCAATGCGCTGCTGACCAGGCGGGACGTGATCGTCGTCGCCTCCGTGTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTCGACCGGATGGTCTCGCTCACGGTGGGTGAGGAGATCGACCGGGACCAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACGTGGCCTTCACCCGCGGCACCTTCCGAGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTGGCCGTCCGCATCGAGATGTTCGGGGACGAGATCGAAGCGTTGTCCACCCTGCACCCGCTGACCGGC
GAGGTCATCAGCGAGGACCGCGAGCTCTACGTCTTCCCCGCCAGCCACTACGTCGCCGGCCCGGAGCGCATGGAGAAGGC
GATCGCCGGCATCGAGGCCGAGCTGGCCGAGCGCCTCGGAGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCGCAGCGCC
TGCGCATGCGCACGACCTACGACCTGGAGATGATGCGCCAGATCGGCTCCTGCTCCGGCATCGAGAACTACTCGCTGCAC
ATGGACGACCGCGAGCGGGGCTCCGCGCCCAACACCCTCATCGACTACTTCCCGGAGGACTTCCTCCTGGTCATCGACGA
GTCGCACGTCACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCGTCCGCGCTGGACAACCGTCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGCCAGACCGTCTACCTG
TCGGCGACCCCCGGCACGTACGAGCTATCGCGCGGCGACGGTTTCGTCGAGCAGATCATCCGTCCCACCGGCCTCATCGA
CCCCGAGGTCGTGGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGGGTGGAGAAGGACG
AGCGGGTCCTGGTCACCACCCTCACCAAGAAGATGGCAGAGGACCTCACGGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTACCTGCACAGCGACGTCGACACGCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGCGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCCCTGATCCAGACCATCGGCCGGGCCGCGCGCAACGTGTCCGGCCAGGTCCACATGTAC
GCGGACAAGATCACGCCGGGTATGGAGAAGGCGATCGAGGAAACCAACCGGCGCCGCGAGAAGCAGATCGCCTACAACAC
GGCGAACGGGATCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCCACCATCGCCCGCGAGGAGCTGGACA
CCGAGCAGCTCCTCGGTACCGGATACCGGCAGGGCAAGGAGGGCCGGGGCGCCAAGGCGCCGGTTCCGGACCTGGGCGGT
CTCGCGACCCACGCACCGGCGGGCGCCAAGGGCGCCAAGAGTGCGAAACCGGCCAAGGGGGCCAAGGCGGCCGAGGTGCT
CACCGACCGGCCGGCCGCCGAACTCGCCTCGCTCATCGAGCAGATGACCGAGCGCATGCGCGCGGCCGCCGCGGAGCTCC
AGTTCGAGGTCGCGGCCCGGATCAGGGACGAGGTCGGCGAGCTGAAGAAGGAGCTCCGGCAGATGAAGGAAGCGGGCCTC
GCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(168-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

Type III restriction enzyme, res subunit (ResIII)

(25-147)

UvrB/uvrC motif (UVR)

(677-711)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

63.123

83.495

0.527
  uvrB Streptococcus pneumoniae R6

63.123

83.495

0.527
  uvrB Streptococcus pneumoniae D39

63.123

83.495

0.527