Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BJAB07104_RS01030 Genome accession   NC_021726
Coordinates   218917..220047 (-) Length   376 a.a.
NCBI ID   WP_002017176.1    Uniprot ID   -
Organism   Acinetobacter baumannii BJAB07104     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 213917..225047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB07104_RS01005 (BJAB07104_00195) - 214092..214856 (-) 765 WP_000786954.1 AraC family transcriptional regulator -
  BJAB07104_RS01010 (BJAB07104_00196) - 214878..216092 (-) 1215 WP_000372838.1 MFS transporter -
  BJAB07104_RS01015 (BJAB07104_00197) - 216229..216879 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  BJAB07104_RS01020 (BJAB07104_00198) - 216985..217905 (+) 921 WP_002000451.1 DMT family transporter -
  BJAB07104_RS01025 (BJAB07104_00199) - 218297..218866 (-) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  BJAB07104_RS01030 (BJAB07104_00200) dprA 218917..220047 (-) 1131 WP_002017176.1 DNA-processing protein DprA Machinery gene
  BJAB07104_RS01035 (BJAB07104_00201) tsaP 220068..221222 (-) 1155 WP_000755281.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BJAB07104_RS01040 (BJAB07104_00202) def 221345..221875 (+) 531 WP_001196539.1 peptide deformylase -
  BJAB07104_RS01045 (BJAB07104_00203) - 221912..222340 (+) 429 WP_000231985.1 DUF2946 family protein -
  BJAB07104_RS01050 (BJAB07104_00204) - 222412..224526 (+) 2115 WP_001120663.1 TonB-dependent copper receptor -
  BJAB07104_RS01055 (BJAB07104_00205) - 224580..224786 (+) 207 WP_000182542.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41917.47 Da        Isoelectric Point: 6.5901

>NTDB_id=59651 BJAB07104_RS01030 WP_002017176.1 218917..220047(-) (dprA) [Acinetobacter baumannii BJAB07104]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAKNGAIITEFLPGTPPLQQNFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=59651 BJAB07104_RS01030 WP_002017176.1 218917..220047(-) (dprA) [Acinetobacter baumannii BJAB07104]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAAGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACAGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAGCCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTAAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAAAATTTTCCACGGAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGTCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(328-369)

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

98.936

100

0.989
  dprA Acinetobacter baumannii D1279779

98.138

100

0.981
  dprA Acinetobacter baylyi ADP1

70.079

100

0.71
  dprA Vibrio cholerae strain A1552

42.598

88.032

0.375

Multiple sequence alignment