Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A237_RS03090 Genome accession   NZ_CP081457
Coordinates   663015..663584 (+) Length   189 a.a.
NCBI ID   WP_003426596.1    Uniprot ID   A0A0K8M6E3
Organism   Pseudomonas syringae pv. actinidifoliorum ICMP 18803     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 658015..668584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A237_RS03075 (A237_003075) bfr 658089..658553 (+) 465 WP_004397024.1 bacterioferritin -
  A237_RS03080 (A237_003080) uvrA 658647..661481 (-) 2835 WP_005614297.1 excinuclease ABC subunit UvrA -
  A237_RS03085 (A237_003085) - 661611..663005 (+) 1395 WP_005740441.1 MFS transporter -
  A237_RS03090 (A237_003090) ssb 663015..663584 (+) 570 WP_003426596.1 single-stranded DNA-binding protein Machinery gene
  A237_RS03095 (A237_003095) - 663808..664107 (-) 300 WP_005739325.1 hypothetical protein -
  A237_RS03100 (A237_003100) - 664353..665387 (+) 1035 WP_017701431.1 fatty acid desaturase -
  A237_RS03105 (A237_003105) - 665505..666248 (-) 744 WP_017701432.1 inositol monophosphatase family protein -
  A237_RS03110 (A237_003110) - 666245..667006 (-) 762 WP_017701433.1 glycerophosphoryl diester phosphodiesterase -
  A237_RS03115 (A237_003115) - 667013..668119 (-) 1107 WP_017701434.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20974.10 Da        Isoelectric Point: 5.9404

>NTDB_id=596439 A237_RS03090 WP_003426596.1 663015..663584(+) (ssb) [Pseudomonas syringae pv. actinidifoliorum ICMP 18803]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=596439 A237_RS03090 WP_003426596.1 663015..663584(+) (ssb) [Pseudomonas syringae pv. actinidifoliorum ICMP 18803]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCCGCGC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCACAGCAGTCCGCACCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCTCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTCGATAGCTTTGATGACGATAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K8M6E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.561
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.476
  ssb Neisseria meningitidis MC58

44.681

99.471

0.444
  ssb Neisseria gonorrhoeae MS11

44.681

99.471

0.444