Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K4732_RS19705 Genome accession   NZ_CP081342
Coordinates   4250536..4251081 (-) Length   181 a.a.
NCBI ID   WP_013024173.1    Uniprot ID   A0A8A4K787
Organism   Pantoea ananatis strain TZ39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4245536..4256081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4732_RS19685 (K4732_19685) - 4246682..4247077 (+) 396 WP_014606933.1 transposase -
  K4732_RS19690 (K4732_19690) - 4248297..4249139 (-) 843 WP_064366253.1 AraC family transcriptional regulator -
  K4732_RS19695 (K4732_19695) - 4249254..4249772 (+) 519 WP_014606935.1 isochorismatase family protein -
  K4732_RS19700 (K4732_19700) - 4249869..4250441 (+) 573 WP_258378964.1 DUF1349 domain-containing protein -
  K4732_RS19705 (K4732_19705) ssb 4250536..4251081 (-) 546 WP_013024173.1 single-stranded DNA-binding protein SSB1 Machinery gene
  K4732_RS19710 (K4732_19710) uvrA 4251303..4254131 (+) 2829 WP_089528312.1 excinuclease ABC subunit UvrA -
  K4732_RS19715 (K4732_19715) - 4254646..4255710 (+) 1065 WP_028722999.1 NAD(P)-dependent alcohol dehydrogenase -
  K4732_RS19720 (K4732_19720) - 4255749..4256072 (-) 324 WP_014606938.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19611.52 Da        Isoelectric Point: 5.2456

>NTDB_id=596006 K4732_RS19705 WP_013024173.1 4250536..4251081(-) (ssb) [Pantoea ananatis strain TZ39]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAAGGGQGNNNGWGQPQQPQQANNNQFSGGAQSRPQQQ
PSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=596006 K4732_RS19705 WP_013024173.1 4250536..4251081(-) (ssb) [Pantoea ananatis strain TZ39]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGATAAGCAGACCGGTGAAAACAAAGAAATCACTG
AATGGCACCGCGTAGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAAATGTTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGCAGGCGGCGGCCAGGGCAATAACAACG
GTTGGGGCCAGCCTCAGCAACCGCAGCAGGCGAACAACAACCAGTTTAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGCAG
CCAAGCGCACCTGCCAGCAACAACAATGAACCACCGATGGATTTCGACGACGACATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.283

100

0.735
  ssb Glaesserella parasuis strain SC1401

57.812

100

0.613
  ssb Neisseria meningitidis MC58

46.154

100

0.464
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.464