Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K4732_RS19140 Genome accession   NZ_CP081342
Coordinates   4120089..4120643 (-) Length   184 a.a.
NCBI ID   WP_221611358.1    Uniprot ID   -
Organism   Pantoea ananatis strain TZ39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4115089..4125643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4732_RS19110 (K4732_19110) - 4116409..4116668 (-) 260 Protein_3753 transposase domain-containing protein -
  K4732_RS19115 (K4732_19115) - 4116662..4117102 (-) 441 Protein_3754 PilL N-terminal domain-containing protein -
  K4732_RS19120 (K4732_19120) - 4117465..4118115 (-) 651 WP_109706781.1 Eco29kI family restriction endonuclease -
  K4732_RS19125 (K4732_19125) - 4118112..4119320 (-) 1209 WP_221611355.1 DNA cytosine methyltransferase -
  K4732_RS19130 (K4732_19130) - 4119524..4119772 (-) 249 WP_221611356.1 DUF2442 domain-containing protein -
  K4732_RS19135 (K4732_19135) - 4119756..4119998 (-) 243 WP_221611357.1 DUF4160 domain-containing protein -
  K4732_RS19140 (K4732_19140) ssb 4120089..4120643 (-) 555 WP_221611358.1 single-stranded DNA-binding protein Machinery gene
  K4732_RS19145 (K4732_19145) - 4120719..4121051 (-) 333 Protein_3760 DUF3577 domain-containing protein -
  K4732_RS19150 (K4732_19150) - 4121811..4122230 (-) 420 WP_028723134.1 hypothetical protein -
  K4732_RS19155 (K4732_19155) - 4122290..4123144 (-) 855 WP_047714763.1 hypothetical protein -
  K4732_RS19160 (K4732_19160) - 4123194..4123649 (-) 456 WP_072015867.1 hypothetical protein -
  K4732_RS19165 (K4732_19165) - 4123971..4124119 (-) 149 Protein_3764 transposase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20171.45 Da        Isoelectric Point: 7.2757

>NTDB_id=596005 K4732_RS19140 WP_221611358.1 4120089..4120643(-) (ssb) [Pantoea ananatis strain TZ39]
MSARGVNKVILVGNLGQDPEVRYMPNGTAVTGISLATSETWRDKHTGENREKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGKLRTREWQDSEGTKRYTTEIVVDVNGTMQMLGGAKSSTNTSGNNKPSGQQSAWGQPQQPQASQAQQTAPSNPANEPPM
DFDDDIPFLGHGYGVCRKAIYAIS

Nucleotide


Download         Length: 555 bp        

>NTDB_id=596005 K4732_RS19140 WP_221611358.1 4120089..4120643(-) (ssb) [Pantoea ananatis strain TZ39]
ATGTCCGCACGCGGCGTCAACAAAGTTATCCTGGTCGGCAATCTCGGTCAGGACCCCGAAGTTCGTTACATGCCAAACGG
AACTGCAGTGACCGGTATTTCTCTGGCCACCTCAGAAACCTGGCGTGACAAACACACCGGTGAAAACCGGGAAAAAACCG
AATGGCATCGCGTCGTTCTGTTTGGAAAGCTGGCTGAAATTGCCGGTGAATACCTGCGTAAGGGTTCACAGGTCTATATC
GAAGGCAAACTGAGAACACGGGAATGGCAGGATAGCGAAGGTACTAAACGCTATACGACCGAAATCGTGGTTGATGTAAA
CGGAACGATGCAGATGCTGGGCGGGGCTAAAAGCAGCACCAACACCAGTGGAAACAATAAGCCGTCAGGCCAGCAGAGCG
CATGGGGCCAGCCACAACAGCCTCAGGCTTCTCAGGCACAACAGACGGCTCCGAGTAATCCGGCGAACGAGCCGCCAATG
GACTTTGATGATGACATACCGTTCCTCGGACACGGCTATGGAGTCTGTCGTAAGGCCATTTACGCAATTTCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.416

96.739

0.652
  ssb Glaesserella parasuis strain SC1401

53.297

98.913

0.527
  ssb Neisseria meningitidis MC58

45.763

96.196

0.44
  ssb Neisseria gonorrhoeae MS11

46.023

95.652

0.44