Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   M8286_RS07420 Genome accession   NZ_CP097577
Coordinates   1531743..1532387 (+) Length   214 a.a.
NCBI ID   WP_275600802.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1526743..1537387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS07395 (M8286_07515) - 1527401..1528738 (-) 1338 WP_275600797.1 hemolysin family protein -
  M8286_RS07400 (M8286_07520) - 1528871..1529650 (+) 780 WP_275600798.1 ABC transporter ATP-binding protein -
  M8286_RS07405 (M8286_07525) - 1529666..1530220 (-) 555 WP_275600799.1 class I SAM-dependent methyltransferase -
  M8286_RS07410 (M8286_07530) - 1530230..1530748 (-) 519 WP_275600800.1 TetR/AcrR family transcriptional regulator -
  M8286_RS07415 (M8286_07535) - 1530870..1531688 (+) 819 WP_275600801.1 cation diffusion facilitator family transporter -
  M8286_RS07420 (M8286_07540) cclA/cilC 1531743..1532387 (+) 645 WP_275600802.1 A24 family peptidase Machinery gene
  M8286_RS07425 (M8286_07545) - 1532495..1533955 (+) 1461 WP_275600803.1 nicotinate phosphoribosyltransferase -
  M8286_RS07430 (M8286_07550) nadE 1533968..1534792 (+) 825 WP_275600804.1 ammonia-dependent NAD(+) synthetase -
  M8286_RS07435 (M8286_07555) trpB 1534767..1535963 (-) 1197 WP_275600805.1 tryptophan synthase subunit beta -
  M8286_RS07440 (M8286_07560) - 1536783..1537310 (-) 528 WP_358636164.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24265.26 Da        Isoelectric Point: 8.4759

>NTDB_id=595736 M8286_RS07420 WP_275600802.1 1531743..1532387(+) (cclA/cilC) [Streptococcus suis strain 3112]
MKTIILFFLGASIGSFLGLAIDRFPEQSIISPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLRLEFLAG
LAVLLCHFQVLDLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFTALVLSQLNWLFCGFLLLAYLTEKWQVNIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFISSIPIILCT

Nucleotide


Download         Length: 645 bp        

>NTDB_id=595736 M8286_RS07420 WP_275600802.1 1531743..1532387(+) (cclA/cilC) [Streptococcus suis strain 3112]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGCCATCGACCGTTTCCCTGAACA
GTCCATTATCTCCCCCTCTAGTCACTGTAATGCCTGCAAGCGACGGCTCAAAGCCTGGGACCTAATTCCCATCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGAGATTGGAATTCTTAGCTGGT
CTAGCCGTCCTGCTCTGCCATTTTCAAGTCCTAGACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTCGTTTTTACTTTTACAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAGTCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTATGTACCACTCCTTTTCATTTCAAGTATTCCTATCATTCTGTGCA
CCTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

48.585

99.065

0.481
  cclA/cilC Streptococcus pneumoniae Rx1

48.058

96.262

0.463
  cclA/cilC Streptococcus pneumoniae D39

48.058

96.262

0.463
  cclA/cilC Streptococcus pneumoniae R6

48.058

96.262

0.463
  cclA/cilC Streptococcus pneumoniae TIGR4

46.226

99.065

0.458
  cclA/cilC Streptococcus mitis NCTC 12261

44.34

99.065

0.439