Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   M8286_RS02150 Genome accession   NZ_CP097577
Coordinates   429463..430128 (+) Length   221 a.a.
NCBI ID   WP_275601345.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 424463..435128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS02125 (M8286_02135) - 424674..426074 (+) 1401 WP_029173958.1 Cof-type HAD-IIB family hydrolase -
  M8286_RS02130 (M8286_02140) - 426076..426447 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  M8286_RS02135 (M8286_02145) cysK 426473..427399 (-) 927 WP_002937015.1 cysteine synthase A -
  M8286_RS02140 (M8286_02150) - 427489..428121 (-) 633 WP_015646510.1 YigZ family protein -
  M8286_RS02145 (M8286_02155) comFA/cflA 428178..429470 (+) 1293 WP_275601344.1 DEAD/DEAH box helicase Machinery gene
  M8286_RS02150 (M8286_02160) comFC/cflB 429463..430128 (+) 666 WP_275601345.1 ComF family protein Machinery gene
  M8286_RS02155 (M8286_02165) raiA 430205..430747 (+) 543 WP_275601346.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25780.55 Da        Isoelectric Point: 8.2732

>NTDB_id=595696 M8286_RS02150 WP_275601345.1 429463..430128(+) (comFC/cflB) [Streptococcus suis strain 3112]
MSNCLLCGQAMRNKTRFSDLIFFSKEKSGTCEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKLVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRLALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=595696 M8286_RS02150 WP_275601345.1 429463..430128(+) (comFC/cflB) [Streptococcus suis strain 3112]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAGAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCACCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACTAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
ACTAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGTGGGTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCTTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCG
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48