Detailed information NTG0595667

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: M8286_RS00325
• Genome accession: NZ_CP097577
• Coordinates: 56248..57249 (+)
• Length: 333 a.a.
• NCBI ID: WP_275601140.1
• Uniprot ID: -
• Organism: Streptococcus suis strain 3112
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 51248..62249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M8286_RS00305 (M8286_00300)	-	51306..52178 (+)	873	WP_275601136.1	ABC transporter ATP-binding protein	-
M8286_RS00310 (M8286_00305)	-	52184..52954 (+)	771	WP_275601137.1	hypothetical protein	-
M8286_RS00315 (M8286_00310)	-	52957..54669 (+)	1713	WP_275601138.1	ABC transporter ATP-binding protein	-
M8286_RS00320 (M8286_00315)	-	54786..56054 (+)	1269	WP_275601139.1	MerR family transcriptional regulator	-
M8286_RS00325 (M8286_00320)	ruvB	56248..57249 (+)	1002	WP_275601140.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
M8286_RS00330 (M8286_00325)	-	57317..57952 (+)	636	WP_275601141.1	HAD-IA family hydrolase	-
M8286_RS00335 (M8286_00330)	comR	58045..58944 (+)	900	WP_275601142.1	helix-turn-helix domain-containing protein	Regulator
M8286_RS00340 (M8286_00335)	-	59152..60372 (+)	1221	WP_275601143.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
M8286_RS00345 (M8286_00340)	-	60563..62086 (+)	1524	WP_275601144.1	quinol oxidase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37627.09 Da
• Isoelectric Point: 4.4708

>NTDB_id=595667 M8286_RS00325 WP_275601140.1 56248..57249(+) (ruvB) [Streptococcus suis strain 3112]
MTNRILDTEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELSDLTEIVERTADIFEMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDTITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=595667 M8286_RS00325 WP_275601140.1 56248..57249(+) (ruvB) [Streptococcus suis strain 3112]
ATGACAAATCGAATTTTAGATACGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTACGTCCGCAGAAATTAAA
TGAGTATATCGGTCAGGACAAGGTTAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCCTTTGTCATCGCCAACGAACTGGGCGTTAAT
ATCAAGCAGACTAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGATGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAGATTCTTTACTCAGCCATGGAAGACTTCTACATCG
ACATCATGATTGGGGCTGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCGCCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCTCTGCGGGCCCGTTTTGGGATTACCGGTCACATGGAATACTACGAACTGTCTGATTT
GACGGAGATTGTCGAGCGGACAGCGGACATCTTTGAGATGGAGATTACCCATGAAGCTGCTATTGAGCTGGCTCGTCGTT
CCCGTGGGACCCCTCGTATCGCCAACCGCCTGCTCAAGCGGGTGAGGGATTTCGCACAGATTATGGGCGATGGTCTGATT
GATGACACCATTACAGATAAGGCCCTAACCATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGTGGCGGTCCTGTCGGTCTTAACACCCTGTCGGTCAATATCGCTGAAGAGCGTGAAA
CAGTGGAAGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACGCGGACAGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.896	97.898	0.577
ruvB	Helicobacter pylori 26695	51.368	98.799	0.508
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474