Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9A05_RS19030 Genome accession   NZ_CP097575
Coordinates   4118815..4119312 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain UNC_PaerCF25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4113815..4124312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9A05_RS19015 (M9A05_19015) bfr 4113824..4114288 (+) 465 WP_003093668.1 bacterioferritin -
  M9A05_RS19020 (M9A05_19020) uvrA 4114359..4117196 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  M9A05_RS19025 (M9A05_19025) - 4117410..4118798 (+) 1389 WP_250177491.1 MFS transporter -
  M9A05_RS19030 (M9A05_19030) ssb 4118815..4119312 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  M9A05_RS19035 (M9A05_19035) pchA 4119401..4120831 (-) 1431 WP_003118152.1 isochorismate synthase PchA -
  M9A05_RS19040 (M9A05_19040) pchB 4120828..4121133 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  M9A05_RS19045 (M9A05_19045) pchC 4121133..4121888 (-) 756 WP_003118153.1 pyochelin biosynthesis editing thioesterase PchC -
  M9A05_RS19050 (M9A05_19050) pchD 4121885..4123528 (-) 1644 WP_003118945.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=595638 M9A05_RS19030 WP_003114685.1 4118815..4119312(+) (ssb) [Pseudomonas aeruginosa strain UNC_PaerCF25]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=595638 M9A05_RS19030 WP_003114685.1 4118815..4119312(+) (ssb) [Pseudomonas aeruginosa strain UNC_PaerCF25]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515