Detailed information NTG0595540

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: M8789_RS08240
• Genome accession: NZ_CP097571
• Coordinates: 1702779..1703783 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus strain V40
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1697779..1708783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M8789_RS08225 (M8789_08225)	yajC	1700311..1700571 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
M8789_RS08230 (M8789_08230)	tgt	1700590..1701729 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
M8789_RS08235 (M8789_08235)	queA	1701752..1702777 (-)	1026	WP_001019179.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
M8789_RS08240 (M8789_08240)	ruvB	1702779..1703783 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
M8789_RS08245 (M8789_08245)	ruvA	1703815..1704417 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
M8789_RS08250 (M8789_08250)	-	1704431..1704886 (-)	456	WP_000368902.1	ACT domain-containing protein	-
M8789_RS08255 (M8789_08255)	obgE	1704899..1706191 (-)	1293	WP_000496098.1	GTPase ObgE	-
M8789_RS08260 (M8789_08260)	rpmA	1707072..1707356 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
M8789_RS08265 (M8789_08265)	-	1707368..1707688 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
M8789_RS08270 (M8789_08270)	rplU	1707694..1708002 (-)	309	WP_000457386.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=595540 M8789_RS08240 WP_001005767.1 1702779..1703783(-) (ruvB) [Staphylococcus aureus strain V40]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=595540 M8789_RS08240 WP_001005767.1 1702779..1703783(-) (ruvB) [Staphylococcus aureus strain V40]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGAATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515