Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   PAC42_RS09985 Genome accession   NZ_CP097560
Coordinates   2107002..2109014 (+) Length   670 a.a.
NCBI ID   WP_058017413.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain C4.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2102002..2114014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC42_RS09965 (PAC42_09955) - 2102884..2104881 (+) 1998 WP_057388198.1 polysaccharide biosynthesis protein -
  PAC42_RS09970 (PAC42_09960) comEA/comE1 2105072..2105401 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PAC42_RS09980 (PAC42_09970) - 2105618..2106814 (-) 1197 WP_033942683.1 amino acid aminotransferase -
  PAC42_RS09985 (PAC42_09975) uvrB 2107002..2109014 (+) 2013 WP_058017413.1 excinuclease ABC subunit UvrB Machinery gene
  PAC42_RS09990 (PAC42_09980) - 2109018..2110517 (-) 1500 WP_003130539.1 MDR family MFS transporter -
  PAC42_RS09995 (PAC42_09985) - 2110567..2111601 (-) 1035 WP_058017414.1 HlyD family secretion protein -
  PAC42_RS10000 (PAC42_09990) - 2111704..2112624 (+) 921 WP_058017415.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 76101.29 Da        Isoelectric Point: 5.0473

>NTDB_id=595402 PAC42_RS09985 WP_058017413.1 2107002..2109014(+) (uvrB) [Pseudomonas aeruginosa strain C4.2]
MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKTFF
PHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHL
DRGDRIDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGEP
PPTLYDYLPDNSLLVIDESHVSVPQVGAMFKGDRSRKETLVEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEA
EHAGRVIEQVVRPTGLVDPEIEVRSAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADNVTGSMQ
RAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEK
MYQLARDLEFEAAAQLRDEIQTLRERLVNV

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=595402 PAC42_RS09985 WP_058017413.1 2107002..2109014(+) (uvrB) [Pseudomonas aeruginosa strain C4.2]
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCCGCCGGCGACCAGCCGGAAGCCATCCGGCAGATGGTCGAGGGGCT
GGAGGCGGGGCTTTCGCACCAGACCCTGCTGGGGGTGACGGGCTCTGGCAAGACTTTCAGCATCGCCAACGTGATTGCCC
AGGTGCAGCGCCCGACCCTGGTCCTGGCGCCGAACAAGACCCTGGCGGCCCAGCTCTACGGGGAGTTCAAGACGTTCTTC
CCGCACAATTCCGTGGAGTACTTCGTTTCCTACTACGACTACTACCAGCCGGAGGCCTACGTACCGTCTTCCGATACCTA
TATCGAGAAGGATTCCTCGATCAACGACCATATCGAGCAGATGCGCCTGTCAGCGACCAAGGCGCTGCTCGAGCGTCCGG
ATGCGATCATCGTTGCCACCGTGTCGTCCATCTACGGCCTCGGTGATCCCGCGTCCTACCTGAAGATGGTCCTGCACCTG
GACCGCGGCGACCGCATCGACCAGCGCGAACTGCTGCGGCGACTGACCAGCCTGCAGTACACCCGTAACGACATGGATTT
CGCCCGTGCGACTTTCCGTGTGCGTGGCGATGTGATCGACATCTTCCCGGCCGAATCCGATCTCGAAGCGATCCGTGTCG
AGTTGTTCGACGACGAGGTGGAAAGTCTCTCGGCCTTCGACCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTGACCCCGCGCGAGACGCTGCTGGAGGCGGTCGACCAGATCAAGGCCGAACTCAA
GGAACGCCTTGACTACCTGCGCAACAACAACAAACTGGTGGAAGCGCAGCGCCTGGAGCAGCGCACGCGTTTCGACCTGG
AGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAATTACTCGCGCTATCTTTCCGGGCGGGCCCCCGGCGAGCCG
CCGCCGACGCTCTATGACTACCTGCCGGACAATTCGCTGCTGGTTATCGACGAGTCGCACGTCAGCGTTCCGCAGGTCGG
CGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAGACCCTGGTGGAATACGGTTTCCGCCTGCCTTCGGCGCTGGACAACC
GGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTGAGTCCGCAGACCATCTTCGTCTCCGCCACCCCGGGCCCCTACGAGGCG
GAACATGCCGGGCGGGTCATCGAGCAGGTGGTGCGTCCCACCGGGCTGGTCGATCCGGAGATCGAGGTACGTTCGGCGAT
GACCCAGGTGGACGACCTGCTCTCGCAGATCCGCCAGCGGGTGGCCAAGGACGAGCGGGTGCTGGTGACTACCCTGACCA
AGCGCATGGCCGAGGACCTCACCGATTATCTCGGTGATCACGACGTTCGGGTACGCTACCTGCACTCGGACATCGATACC
GTCGAGCGAGTGGAGATCATCCGCGACCTGCGCGCCGGTGCGTTCGACGTGCTGGTGGGGATCAACCTGCTGCGCGAAGG
CCTGGACATGCCCGAGGTGTCGCTGGTGGCGATCCTCGACGCGGATAAGGAAGGCTTCCTGCGCTCGGAGCGCTCGCTGA
TCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATCCTCTACGCCGACAACGTCACCGGCTCGATGCAG
CGCGCGATCGACGAGACCGAGCGGCGTCGGGCCAAGCAGATCGCCTTCAACGAAGCCCATGGCATCGTGCCCAAGGGGGT
GCGCAAGGACATCAAGGACATTCTCGAAGGCGCCGTGGTGCCCGGCGCGCGCGGCAAGCGCAAGGGCGTGGCCAAGGTGG
CGGAAGAGAGCGGGCGCTACGAGAACGAACTGCGCTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAACTGGAGGAAAAG
ATGTACCAGTTGGCCCGCGACCTGGAGTTCGAGGCGGCGGCGCAACTACGCGACGAGATCCAGACGCTGCGCGAGCGCCT
GGTCAACGTCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(11-118)

UvrB/uvrC motif (UVR)

(632-665)

UvrB interaction domain (UvrB_inter)

(158-248)

Helicase conserved C-terminal domain (Helicase_C)

(435-542)

Ultra-violet resistance protein B (UvrB)

(550-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.839

98.06

0.567
  uvrB Streptococcus pneumoniae R6

57.839

98.06

0.567
  uvrB Streptococcus pneumoniae D39

57.839

98.06

0.567